Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1631 atggcTTTCACTAGCAATGGCAGTACCGAAGAGAGCGAACTGTATCACGCTCAAATCCACTTGTACAAACACGTATACAACTTCGTGAGCTCCATGGCCCTCAAGTCCGCTGTGGAACTAGGCATAGCAGACGTAATCCACAGCCACGGAAAACCCATGACCCTTTCGGAGTTAGCCTCAGCGCTTAAACTCCACCCCTCAAAAGTTGGCATCCTCCACCGCTTCCTGCGCCTTCTAACACACAACGGATTCTTCGCCAAAACACCAGTGCCCAACGgcggagaaggagaaggagaaggagaaacaGCGTACGCTCTGACTCCTCCTTCCAAGCTTCTAATCAGACGCGGGTCGACATGTTTGGCATCCATTGTTGAGGGTGCGCTTCACGCAAGTTCCCTCGACATGTGGCACTCATCCAAGAAGTGGTTCACGGAGGACAAGGTGCTCACGCTGTATGAGAGCGCAACAGGGGAGAGCTTCTGGGACTTTCTGAACAAAACCACTGAAGCTGAGACGCTGAGCATGTTCCAAGATGCCATGGCTGCAGATTCTGCCATGTTCAAGCTGGCTCTCAGAGAATGCAAACACGTGTTTGAGGGATTGGGTTCCCTCGTCGATGTGGGAGGTGGAACTGGTGGCGTCTCAAGGCTCATCAATGAAGAGTTCCCTCACTTGAAATGCACAGTCTTTGACCAACCACAGGTTGTGGCTAACTTAACCGGAAACGAAAATTTGAACTTTGTTGGTGGAGATATGTTCAAGTCCATCCCCTCTGCTGATGCAGTTTTACTCAAGTGGGTTCTGCATGATTGGAACGATGAGCTCTCCGTGAAGATATTGAAGAACTGCAAAGAGGCTATTtcagggaaaggaaaagaaggaaaGGTGATAATCATAGACATAGCAATTGATGAAGCAAGCGATGATCGCGAATTGACTGAGTTGAAGCTGGACTATGACTTggtgatgctgactatgttcaatggaaaagagagagaaaagaaagagtggGAGAAACTCATATACGAGGCAGGGTTCAGCAGCTACAAGATTACCCCTATATGTGGCTTCAAATCTCTCATTGAAgtttatccttaa 1101 0.4378 MAFTSNGSTEESELYHAQIHLYKHVYNFVSSMALKSAVELGIADVIHSHGKPMTLSELASALKLHPSKVGILHRFLRLLTHNGFFAKTPVPNGGEGEGEGETAYALTPPSKLLIRRGSTCLASIVEGALHASSLDMWHSSKKWFTEDKVLTLYESATGESFWDFLNKTTEAETLSMFQDAMAADSAMFKLALRECKHVFEGLGSLVDVGGGTGGVSRLINEEFPHLKCTVFDQPQVVANLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDELSVKILKNCKEAISGKGKEGKVIIIDIAIDEASDDRELTELKLDYDLVMLTMFNGKEREKKEWEKLIYEAGFSSYKITPICGFKSLIEVYP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1631 366 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 366 IPR016461 GO:0008168
Ssu5g1631 366 Gene3D - 3 113 IPR036388 -
Ssu5g1631 366 PANTHER ISOFLAVONE 4'-O-METHYLTRANSFERASE 6 366 - -
Ssu5g1631 366 Gene3D Vaccinia Virus protein VP39 115 366 IPR029063 -
Ssu5g1631 366 PANTHER O-METHYLTRANSFERASE 6 366 IPR016461 GO:0008168
Ssu5g1631 366 Pfam O-methyltransferase domain 137 348 IPR001077 GO:0008171
Ssu5g1631 366 SUPERFAMILY "Winged helix" DNA-binding domain 11 116 IPR036390 -
Ssu5g1631 366 Pfam Dimerisation domain 32 80 IPR012967 GO:0046983
Ssu5g1631 366 PIRSF O-mtase 1 366 IPR016461 GO:0008168
Ssu5g1631 366 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 128 365 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1631 Ssu-Chr5 50163979 50165806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1631 7 353 Monolignol Biosynthesis Gene Families AT5G54160 32.213 2.08e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1631 K22588 - gmx:106795493 624.394