Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1627 ATGAAGAAGGTTCCCAAGAGCAGCTGCAAATCTGCATCACACAGGCTCTTTAAGGATAAGGCAAAGAACCGAGTGGATGACCTGCAGCTGATGTTCCTGGATCTGCAGTTTGCTAGGAAGGAGAGCCGCACAGTCGATGCTGCAGTGCTCGAGGAACAAGTTCATCAAATGCTTCGCGAGTGGAAGGCTGAGCTCAACGAGCCCTCACCTGCTTCTTCATTGCAGCAAGGTGACAGTCTTGGGTCCTTCTCCACCGATATCTGTCGGCTATTGCAGCTTTGTGAGGAGGAAGATGATGCCTCTAGTCCTTTTGCTGCTCCTAAGCCTGAACCTAATGATCAGACTCTGCAGGCTGGGGGTAAGGTCATGTTCCAAGAGGGCCAACAGCAACATGATTTCCCAGTGGTTGATGAGTGCAAACACTCCACCTCAAGTGTTCAAAATGTGGCAACTAACAACCCGGATGGGCATGCTTTTGAATATCATCAGTTTGATTTGCATCAGGGCTATGACAACGGCTTTTATACTGGTTTTAATGGTACAGATTACTGTGAGGAGGATGCTATTCCTCATATATCTAGCTACCTCCCAAGTATCTGCCCTCCTCCTTCTGCTTTCTTAGGCCCAAAATGTGCTCTTTGGGACTGTCCAAGGCCTGCGCAAGGGTTGGACTGGTGTCAAGACTATTGCAGTAGCTTTCATGCTGCCCTAGCTTTGAATGAAGGGCCACCAGGCATGGCCCCAGTTCTAAGACCTGGGGGCATTGGTTTGAAggataatttacttttttctgCTCTTAGTGCAAAGGCACAAGGAAAAGATGTTGGCATCCCAGAATGTGAGGGAGCTGCAACTGCAAAGTCTCCATGGAATGCGCCTGAGCTCTTTGATCTGTCTGTTCTTGAAGGTGAGACTATTAGGGAGTGGCTCTTCTTTGATAAGCCTCGAAGAGCATTTGAGAGTGGAAACAGAAAGCAAAGGTCATTGCCAGATTACAGTGGGCGTGGTTGGCATGAATCCAGAAAGCAAGTGATGAATGAATTTGGTGGGCTGAAGAGATCCTATTATATGGATCCACAACCACTGAACCATTTTGAGTGGCACCTTTATGAATATGAGATTAGCAAGTGTGATGTGTGTGCCTTGTACCGATTGGAACTGAAGCTTGTTGATGGTAAGAAGAACTCCAAGACAAAGGTAGCAAATGATTCAGTTGCTGATCTGCAGAAGCAGATGGGAAGGCTCTCTGCTGAGTTTCCACCTGACAACAAAAGGGCTGCGAAAGGCAGAGCCAAAATTAATGCCAAAGTTGGCATAGGTGGTGTCTATTCAGCTTCACCCAGAGTGACTCCACTGAATGGAACATACGAGTATGGGTTAGCTGCACCATATGACTATCTTGCTGAGAGCATGGGCGACTACTATGGGACATGA 1434 0.4707 MKKVPKSSCKSASHRLFKDKAKNRVDDLQLMFLDLQFARKESRTVDAAVLEEQVHQMLREWKAELNEPSPASSLQQGDSLGSFSTDICRLLQLCEEEDDASSPFAAPKPEPNDQTLQAGGKVMFQEGQQQHDFPVVDECKHSTSSVQNVATNNPDGHAFEYHQFDLHQGYDNGFYTGFNGTDYCEEDAIPHISSYLPSICPPPSAFLGPKCALWDCPRPAQGLDWCQDYCSSFHAALALNEGPPGMAPVLRPGGIGLKDNLLFSALSAKAQGKDVGIPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEISKCDVCALYRLELKLVDGKKNSKTKVANDSVADLQKQMGRLSAEFPPDNKRAAKGRAKINAKVGIGGVYSASPRVTPLNGTYEYGLAAPYDYLAESMGDYYGT 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1627 477 PANTHER TRANSCRIPTION FACTOR VOZ1 1 477 - -
Ssu5g1627 477 PANTHER TRANSCRIPTION FACTOR VOZ1 1 477 IPR039277 GO:0006355|GO:0048578
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1627 Ssu-Chr5 49950163 49954508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1627 3 475 VOZ-9 Transcription Factor Family AT1G28520 69.857 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF VOZ Ssu5g1627 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1627 - - gmx:100798565 947.962