Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1623 ATGTCTTCTTCCAACAGACACTGGCCATCCATGTTTAAGTCCAAGCCTTGCAACCCCCACAACCAATGGCAGCATGACGTCAACTCCTCTCTCGTGTCCACCGGATGCCAAAGAAGCCCACGCCCTTATACTTCAGGTGAAGAGAGAAGTCCAGAACCCAAGCCAAGATGGAATCCAAAACCTGAGCAAATTCGCATTTTGGAAGCCATCTTTAACTCTGGGATGGTGAATCCCCCAAGGGACGAGATAAGGAAGATCCGGGTGCAGTTGCAAGAGTATGGCCAAGTGGGTGATGCCAATGTTTTCTACTGGTTCCAGAACCGTAAATCCAGGAGCAAGCACAAGATCCGCCACCTTCAAAACTCAAAGAACCAAAACGCAGAATCACAACAAAACGCCGCTGCTTCTCTTTCTCAAAACACACCACCTTCATCCTCATCCTCTAATTCCTCTGACAAATCCTATTCAAAAGAATTAGTACACCACCCCAAGGGATTCTCCTTTGGCTTCTCAAACGTCAATGATGTGGTGCCTAATTCTCCCACCGCTTCTGTGAATCAGACTTATTTTCAGccacacaacaacaacgacaCCAATTTGCTACAACCAGCAGCTGAGCCTTTCTTCTTCCCTGTGCACAATAATGGGCAAGGTGTAGTAGCTACTAATAATGCAGTAACAGCGCATGGGTTTTGCTTCTCTGAGTTCTCCCACAATATGATGCAATCTCAACCTCAGTACCAACAAAATGTTGGGCCTTGCACTAGTCTTTTGCTTAATGAGATCATGAACCATGGAACCTCTTCAAAGAAAGACCAAGATCAAGACAAAGCCTTGAATATAATGCACCATAACCCACAACTTAATTTCTCTCTCACTTCAGCGACAACTGTTCCTTCTATCACCAACACACCCATCTCTGATCCATGCCCCATCACCCAACTTGAAGGTGTTGGTGAGGCTGCAGCAGGTAGGGCAAAATGTACGGTGTTCATTAACGACGTGGCGTTTGAGGTTGCAGTGGGACCCTTCAATGTGCACCAAGCGTTCGGGGATGAGGCCGTGCTTATCCACTCATCCGGCCACCCTGTCCCCACCGACGAGTGGGGCGTCACCCTCCACTCACTGCAGCATGGAGCATACTATTATCTGGTGTGCATGTTTTTGTTAATACTCTttataaatggattttttttcaaagcttTTCTTgttaatgaataa 1221 0.4513 MSSSNRHWPSMFKSKPCNPHNQWQHDVNSSLVSTGCQRSPRPYTSGEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKHKIRHLQNSKNQNAESQQNAAASLSQNTPPSSSSSNSSDKSYSKELVHHPKGFSFGFSNVNDVVPNSPTASVNQTYFQPHNNNDTNLLQPAAEPFFFPVHNNGQGVVATNNAVTAHGFCFSEFSHNMMQSQPQYQQNVGPCTSLLLNEIMNHGTSSKKDQDQDKALNIMHHNPQLNFSLTSATTVPSITNTPISDPCPITQLEGVGEAAAGRAKCTVFINDVAFEVAVGPFNVHQAFGDEAVLIHSSGHPVPTDEWGVTLHSLQHGAYYYLVCMFLLILFINGFFFKAFLVNE 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1623 406 CDD homeodomain 53 115 IPR001356 GO:0003677
Ssu5g1623 406 MobiDBLite consensus disorder prediction 122 154 - -
Ssu5g1623 406 Pfam Homeodomain 54 114 IPR001356 GO:0003677
Ssu5g1623 406 SMART HOX_1 52 119 IPR001356 GO:0003677
Ssu5g1623 406 ProSiteProfiles 'Homeobox' domain profile. 50 115 IPR001356 GO:0003677
Ssu5g1623 406 MobiDBLite consensus disorder prediction 114 157 - -
Ssu5g1623 406 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 387 IPR044557 GO:0003700|GO:0050793
Ssu5g1623 406 SUPERFAMILY Homeodomain-like 47 118 IPR009057 -
Ssu5g1623 406 MobiDBLite consensus disorder prediction 45 61 - -
Ssu5g1623 406 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 387 - -
Ssu5g1623 406 MobiDBLite consensus disorder prediction 1 44 - -
Ssu5g1623 406 Gene3D - 54 119 - -
Ssu5g1623 406 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1623 Ssu-Chr5 49884939 49887066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1623 1 386 Wox Gene Family AT2G33880 42.759 1.58e-85 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ssu5g1623 Homeodomain 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1623 - - gmx:100778000 536.954