Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1621 ATGGCTATTCATGCAGCTTCTGAAGGGATTCTTGAGAATGTGTGGGCTAAAATTATGAGCAGTGATAGATTGGGTGATGCAGCAGAATCTCCTCACTCCTTGGAAGAACAGCCTAACCCTGATGGAAGAGAAGGGTCAATGGAAATTCTGAAAAGGCTTCCAAGTTTAGGGAGATGGATGTCAATGGGGGCTGATTTCTGGGAAGAAAGTTTATATAGTGTTCTAACTAGTGCAACCAATACAGAAGATTCTGGTGACACCATTATGGGAATTGGCCGTGCTACTAAATCCAATAATAATAAGGTAGAAGATGGTGTGAGAGCAGAAAAGGTAGTAGCCAAACACTACAGGGGAGTAAGGAGAAGGCCATGGGGCAAATATGCAGCAGAGATTAGAGACCCATCCAAGAAAGGTGCTAGAGTTTGGCTTGGGACATTTGAAACAGCTGAAGAAGCAGCTCTGGCTTATGACAAGGCTGCTTTGAGAATTAGAGGTCCAAAGGCGCACCTCAATTTCCCACTAGAGACAGTTGTAGCACAGACTTCAGGAATAGGCCAGAAAGGAACCGGTTGGGACAAAGAAAACTCTTGCAATGCCCggaagagaaaggaagaatTTGTTGATGTGGTGAATGAAAAAcctgtaacaaaaaaattggctAGATTGGAAAGGGGGATAACAAATGAGCTTGATGTTTTTGTGTTTCAGGACTTGGGATCTGATTACTTGGACAATTTGCTCTCTACTTTTAACAGAATGATTATTAAGTTagtcattaaaagtggttacaGATAA 795 0.395 MAIHAASEGILENVWAKIMSSDRLGDAAESPHSLEEQPNPDGREGSMEILKRLPSLGRWMSMGADFWEESLYSVLTSATNTEDSGDTIMGIGRATKSNNNKVEDGVRAEKVVAKHYRGVRRRPWGKYAAEIRDPSKKGARVWLGTFETAEEAALAYDKAALRIRGPKAHLNFPLETVVAQTSGIGQKGTGWDKENSCNARKRKEEFVDVVNEKPVTKKLARLERGITNELDVFVFQDLGSDYLDNLLSTFNRMIIKLVIKSGYR 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1621 264 Gene3D AP2/ERF domain 114 175 IPR036955 GO:0003700|GO:0006355
Ssu5g1621 264 CDD AP2 114 173 IPR001471 GO:0003700|GO:0006355
Ssu5g1621 264 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 252 - -
Ssu5g1621 264 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Ssu5g1621 264 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Ssu5g1621 264 ProSiteProfiles AP2/ERF domain profile. 115 173 IPR001471 GO:0003700|GO:0006355
Ssu5g1621 264 Pfam AP2 domain 115 165 IPR001471 GO:0003700|GO:0006355
Ssu5g1621 264 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF091 12 252 - -
Ssu5g1621 264 SUPERFAMILY DNA-binding domain 115 175 IPR016177 GO:0003677
Ssu5g1621 264 SMART rav1_2 115 179 IPR001471 GO:0003700|GO:0006355
Ssu5g1621 264 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1621 Ssu-Chr5 49854523 49855317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1621 10 250 AP2-EREBP Transcription Factor Family AT4G18450 33.987 2.23e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu5g1621 AP2 2.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1621 - - gmx:100820226 298.516