Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1616 ATGAATTTCCCATCCACTATTCCTCTAGCACTTCCAAGAATTCGGCTCTCCCATTTATTCATTTCCTTTGTTCTCATTAATTGCTACCAAGCTGAGGTTACAAATGGAGACAATAAAGTTATATCTATAGGTGCAATAATTGATGTTAACTCTCGCATTGGGAAAGAACAGCGTGTAGCCATGGACCTTGCAGCTCAAAGTTACAATAACACTTCCAAGGCCTACAAGCTGGCTCTTCATTTTCAGGAACCCACCAAAGATCCCTTCAGAGCCACTTCTCTTGCTAGAAAGATGATTAAGAAGCAGAAGATGCAAGTGATTATAGGGATGCACACATGGACAGAAGCAGCTTCAGTGGCTGAATTAGGACGCAAAACTCAAGTTCCTGTCATATCCTTTGCAGCACCTACCATTACCCCACCACTGATGCCAATTCGCTGGCCTTTTTTGGTGAGAATGGCCAACAATGGTACTGCATATGCAAAATGTGTTGCAGATATGGTGCATGCTTATAGTTGGCAGAGAGTAGTAGTCATCTATGAAGGCGATGCCAATGGTGAAGATTATGGGATGCTAGCACTGCTATCTGAGACCCTCCAAGAGGTTGGTTCAATGATTGAATACCGTTTAGCCCTTCCATCACCTTCTTATTTGCCTAATCCCGGAGAGTTCATTCGTGAAGAGCTGTttaagttaattgaaaatacGCAATCCCGGGTTTTCATTGTTCTGCAATCATCATTAGAAATGGTGATCCATTTGTTCAGAGAAGCTTCACGAATGGGACTTGTGGATAGAGAATCAGCTTGGATAATCCCAGAGAGCATAACTAATTTGCTGGACTCTGTCAACAAGTCTGCTATATCCTACATGGAAGGAGCTTTAGGAATCAAGACCTACTACTCTGAAAATAGCAGTGAGTATCAAGATTTTGAGGCTCAGTTCCGGAAATCTTTTCTGGGCAAGTATCCTGAGGAGGATAATCGCAACCCGGGATTTTATGCTCTGCAAGCATATGATAGCATTAAAATTGTTGCACAAGCAGTAGATAGAATGGCCAGTGGCAATGGTAGTGGCAGAAAGACTTTGCTAAGAGAAATACTGTCTAGCAATTTCCTTGGTTTAAGTGGGGAAATTCAATTTGAAGCAGCACAGCTCTTGCAGAATCCTACCTTAACGATTGTAAATGTAGTTGGGAAGAGTTACAGTGAATTAGACTTTTGGACACTAGAACGTGGGTTCATCTCTAGCCTCACTACAGAACAAGGTTCAAATAGTGTTTCTAGGAACACAGAAAGGTTAAGTGGGGTAGTAATATGGCCAGGGAAAGTCAAAAGAGTTCCGAAGGGCTGGAATCTGCctactaaaaaaaatccaatgaaAATAGCGGTTCCTGGAAGAACCTCTTTTTCCAAGTTTGTCAAGGTTGATCGTGACGAGCTtacaaattcatataaatatagtgGATTCTGCATTGAAATTTTTGAGAAGGTATTAGGCCTTTTGGAGTATGACCTGCCATTTGAGTTTTATCCCATCAATGGAACCTATCCCGATCTGGTTCAACTTGTTTATAACAAGACTTACGAGGCTGTTGTTGGAGACGTGACCATATTAGCAGAAAGATTGCAATATGTAGATTTTACTGTGCCATATGCAGAATCAGGATTGTCAATGATAGTTACGGAAAATTCCAAAGAATCGGCATGGATGTTTATGAAGCCCTTTACCTGGCAAATGTGGGCGGCAACTGGTGCCATGTTGATTTACACAATGTTAGTGGTGTGGTACCTGGAGCGGAAACCCAATCCAGAGTTTCATGGCAGTTGGAAAAGCCAGATCAGCACTGCTCTTATGTTTACCTTCTCCTCTCTATTCTTTGCTCATAGGGAGAAAATCTATAGCGACTTATCTCGTGTGGTGATGGTATCATGGCTATTTCTAGTATTGATTCTTAACTCAAGCTACACTGCTAGTCTTTCTTCCATGCTCACAGTTCAACGACTGCGACCAAATGTGACGGACATTGAGTACCTGAAGAAGAACAACATGAAAATTGGTTGTGACGGAGATTCCTTTGTTACGACATACCTAGAGAAAGTCGAAAATTTCAAGCGAGAGAACATCATAAACATTAATAGTGAATACAGTTATGAAGATGCATTCAAAAACAACTCAATAGCAGCTGCTTTTCTCGAACTCCCTTATGAAAAAGTATATATCAGTGAATACTGCAAGGGATACTCTGCCTTTGTACCTACCACCAAATTTGGAGGACTAGGATTTCTGTTCCAGAAAGGCTCTCCAGTGGTCAGAGATGTTTCCAAAGCTATACTGCAGCTCTTAGAGCAGGGAGAATTGAAGTTGTTAGAAGACAAATGGTTGAACACTGCAGGCGAGTGCTCCAACAATTCCACCTCCGAGAGTACAGAAAGTTTGAGGCTTGGAAGCTTCTGGGTTCTGTACGTGATTTCTGGTGCCACTTCTACTATTTGTTTTCTGGTTTATACCATCCCGTCGCTGAAACCTAGTCAAACATCCCAAGATGAGGCACAAGAAAGCAATGGCCACCGAAGTGATGAAAGCCCATGGAAGAGGGTAGTTGTAATAGCTAAGCAGATTTATAGCAGAAAGCATGCACCACTGACACCCGTGCATCAGCAGGCAATTGCTCAACAAATACAATTACCAGATATAGCCGTGTCTTCCCCACCAACGGTTACGATTCACAATCCTTGA 2739 0.4147 MNFPSTIPLALPRIRLSHLFISFVLINCYQAEVTNGDNKVISIGAIIDVNSRIGKEQRVAMDLAAQSYNNTSKAYKLALHFQEPTKDPFRATSLARKMIKKQKMQVIIGMHTWTEAASVAELGRKTQVPVISFAAPTITPPLMPIRWPFLVRMANNGTAYAKCVADMVHAYSWQRVVVIYEGDANGEDYGMLALLSETLQEVGSMIEYRLALPSPSYLPNPGEFIREELFKLIENTQSRVFIVLQSSLEMVIHLFREASRMGLVDRESAWIIPESITNLLDSVNKSAISYMEGALGIKTYYSENSSEYQDFEAQFRKSFLGKYPEEDNRNPGFYALQAYDSIKIVAQAVDRMASGNGSGRKTLLREILSSNFLGLSGEIQFEAAQLLQNPTLTIVNVVGKSYSELDFWTLERGFISSLTTEQGSNSVSRNTERLSGVVIWPGKVKRVPKGWNLPTKKNPMKIAVPGRTSFSKFVKVDRDELTNSYKYSGFCIEIFEKVLGLLEYDLPFEFYPINGTYPDLVQLVYNKTYEAVVGDVTILAERLQYVDFTVPYAESGLSMIVTENSKESAWMFMKPFTWQMWAATGAMLIYTMLVVWYLERKPNPEFHGSWKSQISTALMFTFSSLFFAHREKIYSDLSRVVMVSWLFLVLILNSSYTASLSSMLTVQRLRPNVTDIEYLKKNNMKIGCDGDSFVTTYLEKVENFKRENIININSEYSYEDAFKNNSIAAAFLELPYEKVYISEYCKGYSAFVPTTKFGGLGFLFQKGSPVVRDVSKAILQLLEQGELKLLEDKWLNTAGECSNNSTSESTESLRLGSFWVLYVISGATSTICFLVYTIPSLKPSQTSQDEAQESNGHRSDESPWKRVVVIAKQIYSRKHAPLTPVHQQAIAQQIQLPDIAVSSPPTVTIHNP 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1616 912 CDD GluR_Plant 458 795 - -
Ssu5g1616 912 SUPERFAMILY Periplasmic binding protein-like II 436 795 - -
Ssu5g1616 912 SMART GluR_14 461 797 IPR001320 GO:0015276|GO:0016020
Ssu5g1616 912 Pfam Bacterial extracellular solute-binding proteins, family 3 484 796 IPR001638 -
Ssu5g1616 912 Gene3D - 43 390 - -
Ssu5g1616 912 Gene3D - 468 568 - -
Ssu5g1616 912 Pfam Ligand-gated ion channel 797 826 IPR001320 GO:0015276|GO:0016020
Ssu5g1616 912 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 21 880 - -
Ssu5g1616 912 CDD PBP1_GABAb_receptor_plant 42 414 IPR044440 -
Ssu5g1616 912 Pfam Receptor family ligand binding region 59 398 IPR001828 -
Ssu5g1616 912 PIRSF IGluLR_plant 13 896 IPR017103 -
Ssu5g1616 912 Gene3D - 569 712 - -
Ssu5g1616 912 SUPERFAMILY Periplasmic binding protein-like I 38 451 IPR028082 -
Ssu5g1616 912 Gene3D - 156 409 - -
Ssu5g1616 912 PANTHER GLUTAMATE RECEPTOR 3.4 21 880 - -
Ssu5g1616 912 Gene3D - 738 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1616 Ssu-Chr5 49763548 49767355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1616 12 836 Ion Channels AT2G29120 33.411 1.41e-146 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1616 - - gmx:100780320 1462.2