LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g1592	ATGTGTACAACAACCTTGAACATTCTCCTCTTGTTATCACTTCTACTcacttgttcttcttcttcttcgtcacGGCCACGGCGTGTTCTGCATCAACCGCTCTTCCCCAGAATCTCTGTCCCTCCAACACAACCCCCAACTTCATCTCCTCAACCCCAGCCCAAACAACAACACCAACCAAAActtccattttcttcttcttcatcctcttcacCCCCACAGAAACCTTTCTTCCCTTCCTCTTCCTACCATTCCCCGCCACCCCCTCCTTTTCCAACCGTCGTCGCCACTTTCCCCGCCAACATCTCCTCCCTCCTCCTCCCCCACCCCTCCGCCCGCCACCACCGCTCCGCCGCCGCACTCGCCgtctccctctccctcttctcCCTCGCCCTCCTAGCCGCCGCCGCCGCCTTCCTCCTCCACCGCCGCCGCACGCgcacctcctcctccgccgccgcccATGACGACGACGACAAAGCATCGAGATCGGACAGCCTCCGCCTATTCCCGCCGAACATCGCCACCTCCGACGGCGCCGACCGTAAACCTCACTGCAAGTCGAGCCCGACGTCGGAGCTGCTCTACCTCGGCACGGTCGCGAACTCAGTCAACGCAACCGTGGACTCAAGCTCCAGCCACAACGACGGTTTCCGACCGCCGTACCAAAAACTCGGGGACTCGCCGGAGCTCAACCCGCTTCCGCCACTGCCACGTCACAAAATCAAGTCGTGGACGAGCGAAGAGGACGATGATAAAGATacgaaagaggaagaagaagaggaggaagagtTTTTTTCTCCAAGAGGTTCTGCTGGTGGAAACAAACAACACAGTCCTCCTTCTCCTTCTGCTCTTGCTGCTGCTTCAAGCTCACGCGTGTTCCACGTGGATAAGTTCGGTTCTAGAAGCTTCACTTCCAGAACCCCTTCTTACCCTCGTTCCAATTCCCTCTCGCTCTCGCGTTCCCCTTCGCTTAATTTCAGCCCCGCAAGCGTGAAATCATTCCCTCCGAACGACTCTTCTCCGACGGAGGAATGGCGTGTTCCGCCTCAGGGGAAGAATTCTCCGGCGAGCACTCTgcctcctcctccgccgccaCCGCCACCGCCTCCGCCGCCGCTGTTTTGGGAGGCCCCGCGAAGTGTTGGCGTTAGGAATGAGAGTGAGGAGACGCCGAAGCCGAAGTTGAAAGCCTTGCATTGGGATAAGGTTAAGGCCAGCTCGGACAGGGTCATGGTTTGGGATCGATTGAGACCAAGTTCTTTTCAGTTGAACGAGGACATGATTGAAACGctttttatggtaaataataatTCCAAGGACAGTGTCGGGGTTGCGATTAGAGATAATGGTCGCCGTCAAATGGTTCATTCGGGTTCTCCGTTGACACCAGAAAATAGGGTGCTTGACCCCAAGAAGTCTCAGAACATTGCCATTTTGCTTAGGGCGCTGAATGTGACTATTGACGAAGTGTGTGACGCCCTCAGGGAAGGCAATTGTGATACATTGGGAACAGAACTTCTAGAAAGTTTATTGAAGATGGCTCCAACTAAAGATGAAGAATCTAAACTGAAGGAGTTTCAAGATGAATCGCCCTTCAAGCTTGGCCCAGCTGAGAAATTTCTAAAAGTTGTGCTTGATATACCTTTTGCGTTTAAGAGAGTGGATGCAATGCTCTACATTGCTAATTTTGATTCTGAATTAGAATACCTTAAGAAGTCCTTTGAAACTCTGCAgGTGGCCTGTGAGGAATTAAGGAACAGCCGCATGTTTTTGAAGATACTTGAAGCAGTGCTGAGAACAGGAAACCGAATGAATGTTGGCACCAATCGTGGTGATGCTCAGGCGTTCAAACTGGACACACTTTTGAAGTTACTTGATATTAAAGGAACTGATGGAAAGACTACTCTCTTGCATTTCGTTGTACAGGAAATTGTCAGGACCGAGGGTTCTCATATTTCTGGTTCTAATAATCACCATGCCTCTGATAATGCCCACCAATATACTCTTCAAGATGAGGTTGACTTCAAAAAACTTGGACTGCAAGTTGTTTCGGGATTGAGTGGGGAGCTCGCCAATGTTAAAAAAGCAGCTGCTATGGATTCAGACATGCTCAGTAGTGATGTTGCTAAACTTGCCAGAGGAATTGAGAAAGTTGTGCAAGTTGTAAAAATGAACGAGGAGTCACCTTTGAAAGAAACTAACCAAAGGTTTTCTGAGTCAATGAAAGATTTCTTGGAGAGGGGAGAGCAAGAGATTTTAACAATCCAGGCCCAAGAGAAAAATGCCCTCTCTTCAGTAAAAGAGATAACGGAGTATTTCCATGGAAATTCAGCAAAGGAAGAAGCTCAtccatttagaatttttatggtTGTAAGGGATTTCCTTTCAATACTAGATGGTGTTTGCAAGGAAGTTGGTAAAGTAAATGAGAGGACTTTGGTTGGTTCTCGTCAATCTGTAATGCCTGCAAATCCTATAATGCCAACCATTTTCCCTGAGATTATTGGTAAGCAGCCATCTGATTCCTCTGAATCTGATTAA	2547	0.4574	MCTTTLNILLLLSLLLTCSSSSSSRPRRVLHQPLFPRISVPPTQPPTSSPQPQPKQQHQPKLPFSSSSSSSPPQKPFFPSSSYHSPPPPPFPTVVATFPANISSLLLPHPSARHHRSAAALAVSLSLFSLALLAAAAAFLLHRRRTRTSSSAAAHDDDDKASRSDSLRLFPPNIATSDGADRKPHCKSSPTSELLYLGTVANSVNATVDSSSSHNDGFRPPYQKLGDSPELNPLPPLPRHKIKSWTSEEDDDKDTKEEEEEEEEFFSPRGSAGGNKQHSPPSPSALAAASSSRVFHVDKFGSRSFTSRTPSYPRSNSLSLSRSPSLNFSPASVKSFPPNDSSPTEEWRVPPQGKNSPASTLPPPPPPPPPPPPPLFWEAPRSVGVRNESEETPKPKLKALHWDKVKASSDRVMVWDRLRPSSFQLNEDMIETLFMVNNNSKDSVGVAIRDNGRRQMVHSGSPLTPENRVLDPKKSQNIAILLRALNVTIDEVCDALREGNCDTLGTELLESLLKMAPTKDEESKLKEFQDESPFKLGPAEKFLKVVLDIPFAFKRVDAMLYIANFDSELEYLKKSFETLQVACEELRNSRMFLKILEAVLRTGNRMNVGTNRGDAQAFKLDTLLKLLDIKGTDGKTTLLHFVVQEIVRTEGSHISGSNNHHASDNAHQYTLQDEVDFKKLGLQVVSGLSGELANVKKAAAMDSDMLSSDVAKLARGIEKVVQVVKMNEESPLKETNQRFSESMKDFLERGEQEILTIQAQEKNALSSVKEITEYFHGNSAKEEAHPFRIFMVVRDFLSILDGVCKEVGKVNERTLVGSRQSVMPANPIMPTIFPEIIGKQPSDSSESD	848

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g1592	848	MobiDBLite	consensus disorder prediction	146	190	-	-
	Ssu5g1592	848	MobiDBLite	consensus disorder prediction	207	379	-	-
	Ssu5g1592	848	MobiDBLite	consensus disorder prediction	356	378	-	-
	Ssu5g1592	848	MobiDBLite	consensus disorder prediction	58	78	-	-
	Ssu5g1592	848	MobiDBLite	consensus disorder prediction	272	289	-	-
	Ssu5g1592	848	PANTHER	FORMIN-RELATED	10	845	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Ssu5g1592	848	MobiDBLite	consensus disorder prediction	251	265	-	-
	Ssu5g1592	848	MobiDBLite	consensus disorder prediction	302	355	-	-
	Ssu5g1592	848	Gene3D	Formin, FH2 domain	393	823	IPR042201	-
	Ssu5g1592	848	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	364	813	-	-
	Ssu5g1592	848	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	387	826	IPR015425	-
	Ssu5g1592	848	PANTHER	FORMIN-LIKE PROTEIN 2	10	845	-	-
	Ssu5g1592	848	MobiDBLite	consensus disorder prediction	149	165	-	-
	Ssu5g1592	848	MobiDBLite	consensus disorder prediction	38	57	-	-
	Ssu5g1592	848	MobiDBLite	consensus disorder prediction	34	85	-	-
	Ssu5g1592	848	SMART	it6_source	387	815	IPR015425	-
	Ssu5g1592	848	Pfam	Formin Homology 2 Domain	389	800	IPR015425	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g1592	Ssu-Chr5	49361113	49365263	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g1592	358	840	FH2 protein (formin) Gene Family	AT3G25500	63.581	0.0	613

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g1592	-		-	gmx:100786203	1181.01