Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1588 ATGGAAGGAGGAGGAGCTGCTCCGCCAGCCGACACCGTGATGTCGGACGCGGCGCCGCCGCAGCCGGACccgcagcagcagcagcagccgCTGGCGGCTGCGATGGGGATCGAGAATATTCCGGCGACGCTGAGCCACGGCGGCAGGTTCATCCAATACAACATATTCGGCAACATATTCGAAGTCACTGCGAAATACAAGCCACCCATCATGCCCATCGGAAAAGGCGCATACGGCATCGTTTGCTCGGCTTTGAATTCGGAGACGAATGAGCACGTTGCCATCAAGAAGATTGCGAATGCGTTTGACAACAAGATTGACGCCAAGAGGACCCTCCGCGAAATCAAGCTGCTTCGCCACATGGATCATGAAAACGTGGTTGCAATCAGGGATATAGTGCCGCCACCTCAAAGAGAGACATTCAATGATGTTTACATTGCATATGAGTTGATGGACACTGACCTTCACCAAATCATTCGTTCAAATCAAGCATTATCGGAAGAGCACTGTCAgTATTTCCTGTATCAAATCCTCCGCGGGTTGAAGTACATACATTCTGCAAATGTTCTGCATAGGGACTTAAAACCTAGCAACCTTCTCCTGAATGCCAACTGCGACttgaaaatttgtgattttggacTGGCTCGTGTCACCTCTGAAACTGATTTTATGACTGAATATGTTGTTACAAGATGGTACCGTGCACCAGAGCTTCTGTTAAACTCTTCTGATTACACAGCAGCAATTGATGTATGGTCTGTTGGTTGTATTTTCATGGAACTGATGGATCGAAAGCCTTTGTTTCCTGGCAGAGATCATGTGCATCAGTTGCGTCTACTTATGGAGCTGATTGGTACCCCATCAGAAGCTGATTTGGGGTTTCTGAATGAAAATGCGAAGAGATACATTAGGCAACTGCCTCTTTACCGCCGTCAGTCTTTCCAAGAAAAGTTTCCGCATGTCCATCCTGAAGCTATAGATCTTGTTGAAAAAATGTTAACTTTTGATCCTAGAAAAAGGATTACTGTTGAAGGTGCACTGGCACACCCGTACTTAACATCTCTGCACGACATCAGTGATGAACCTGTGTGCATGACTCCCTTCAGCTTTGACTTTGAACAACATGCTTTGACTGAGGAACAGATGAAAGAACTGATATACCGAGAGGCTCTAGCATTTAACCCCGAGTATCAGCAGTAG 1200 0.4517 MEGGGAAPPADTVMSDAAPPQPDPQQQQQPLAAAMGIENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIVPPPQRETFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPSEADLGFLNENAKRYIRQLPLYRRQSFQEKFPHVHPEAIDLVEKMLTFDPRKRITVEGALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIYREALAFNPEYQQ 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1588 399 ProSitePatterns MAP kinase signature. 102 205 IPR003527 GO:0004707|GO:0005524|GO:0006468
Ssu5g1588 399 SUPERFAMILY Protein kinase-like (PK-like) 72 360 IPR011009 -
Ssu5g1588 399 MobiDBLite consensus disorder prediction 1 30 - -
Ssu5g1588 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Ssu5g1588 399 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 26 397 - -
Ssu5g1588 399 Gene3D Transferase(Phosphotransferase) domain 1 151 379 - -
Ssu5g1588 399 ProSitePatterns Protein kinases ATP-binding region signature. 73 97 IPR017441 GO:0005524
Ssu5g1588 399 CDD STKc_TEY_MAPK 60 395 - -
Ssu5g1588 399 Pfam Protein kinase domain 72 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1588 399 Gene3D Phosphorylase Kinase; domain 1 50 389 - -
Ssu5g1588 399 ProSiteProfiles Protein kinase domain profile. 67 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1588 399 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 26 397 - -
Ssu5g1588 399 SMART serkin_6 67 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1588 Ssu-Chr5 49234365 49239159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1588 1 399 MAP Kinase Gene Family AT2G43790 86.717 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Ssu5g1588 Pkinase 5.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1588 K14512 - gmx:547616 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1588 5 49234365 49239159 Ssu5g1588 5 49234365 49239159 ECH