Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1580 ATGGGAAAGAAGGGGAGTTGGTTTTCTGCAATCAAGAGGATTTTCACACACCACTCCAAGGGGAAGGAGTCGGATAACAAAGGcacaaaagagaagaagaaaggtaTAGGAAAACTAAGGCCTGGAGAGACCAATTCATTCATCCCCCTCTTCAGAGAGCCAAGTAGCATTGAGAAAATCTTTGGGGACTTTGAAAGGGAGCAGCAACTACTGGGGTTAAGGCCTGCCACTCCTCCTGAGAGACCCAAAACACCACCTTATGTCCCTCCAAGAGCTCCTTCTCCAAGGGCTCCTTCTCCAAGGCCTCCATCTCCAAGGGCAGCTTCCCCCAGGGCTTCTTCTCTGCGTGTTACCTCTCCCAAAGCTACATCTTCCCGGACTGCTCATCACCACAAGGAGGTTGGCTACAGACCAGAACCAACTTTGAGGCAACAGCATGCCTCAGCTACTAAGATCCAGGCTGCTTACAGAGGTTATATGGCCAGGCGGAGTTTTAGAGCTCTAAAGGGTCTGGTGAGGCTTCAAGGAGTGGTAAGAGGACAGAATGTGAAGAGGCAGACAGTAAATGCCATGAAACACATGCAGCTGTTAGTGCGAGTTCAATCTCAGATTCAGTCTCGAAGGATCCAGATGTTGGAAAACCAGGCACGATATCAAGCTGAGTTCAAGAATGATAAGGACGCAGCCAGTGCCTTGGGCAAACTCACTTCTGAAGCAGGTAATGAAGAGTGGGATGATAGCTTACTGACAAGAGAGGAAATAGAGGCAAGGTTGCAGAGGAAGGTCGAAGCAATCATCAAAAGAGAAAGAGCAATGGCATTTGCATATTCACATCAGCTATGGAAAGCCACTCCAAAATCAACTCACACCCCAGTGACAGATACACGATCAGGTGGATTTCCTTGGTGGTGGAACTGGTTGGAAAGGCAAGCACCTGCAGCGACTCCACAAGAAAGACAAGTCTTGAAGAATTTTCAACTCACACCCCCAAGACCATACTCAGAACAGAAGACTAGTCCAAGACCTGGCTCCAGCATTCAAAGGCAGCAGCAGCCTCATTTTGCCTTTGATAACATGGACACTCCCACTCCAAAGTCCACAAAATCAACCATAGTGACATCTTCAAAACCGGTGCGAACGCCTCCATATAGAACTCCACAAGCAAACAGCTCAGGCTCTAAATTTCCAAGGCCAAGGGGTGTGGGAGCCAATTCACCTTTTGATGTGACCCTGAAGGATGATGAGAGTCTCACAAGCTGCCCACCATTTTCAGTGCCAAACTACATGGCTCCAACCCTTTCTGCCCAGGCCAAAGTACGTGCTAGTAGTAATCCTAGAGAAAGGCTTGGTGGGACTCCAACAAGTACTGATTCAAAGAGAAGACTCTCATTCCCTTTGTCACAAGGAATTGGGTCTTTCAAATGGTCTAAAGGGTTCTCAAGCAAAGATCAAAAGGTGCCAGATAAATTTCAGTCACTTGAATCTATAGGAAACGTGAGTGTGGATTCAACAGTGTCTTTGCCCGCAAGGGTGGGAAGAAAGCCTTTTACAAGATTTGtgtga 1563 0.469 MGKKGSWFSAIKRIFTHHSKGKESDNKGTKEKKKGIGKLRPGETNSFIPLFREPSSIEKIFGDFEREQQLLGLRPATPPERPKTPPYVPPRAPSPRAPSPRPPSPRAASPRASSLRVTSPKATSSRTAHHHKEVGYRPEPTLRQQHASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTVNAMKHMQLLVRVQSQIQSRRIQMLENQARYQAEFKNDKDAASALGKLTSEAGNEEWDDSLLTREEIEARLQRKVEAIIKRERAMAFAYSHQLWKATPKSTHTPVTDTRSGGFPWWWNWLERQAPAATPQERQVLKNFQLTPPRPYSEQKTSPRPGSSIQRQQQPHFAFDNMDTPTPKSTKSTIVTSSKPVRTPPYRTPQANSSGSKFPRPRGVGANSPFDVTLKDDESLTSCPPFSVPNYMAPTLSAQAKVRASSNPRERLGGTPTSTDSKRRLSFPLSQGIGSFKWSKGFSSKDQKVPDKFQSLESIGNVSVDSTVSLPARVGRKPFTRFV 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1580 520 PANTHER IQ-DOMAIN 5-RELATED 1 517 - -
Ssu5g1580 520 SMART iq_5 144 166 IPR000048 GO:0005515
Ssu5g1580 520 MobiDBLite consensus disorder prediction 1 144 - -
Ssu5g1580 520 Pfam Protein of unknown function (DUF4005) 398 472 IPR025064 -
Ssu5g1580 520 Gene3D - 127 165 - -
Ssu5g1580 520 MobiDBLite consensus disorder prediction 16 39 - -
Ssu5g1580 520 MobiDBLite consensus disorder prediction 78 107 - -
Ssu5g1580 520 MobiDBLite consensus disorder prediction 439 460 - -
Ssu5g1580 520 MobiDBLite consensus disorder prediction 324 394 - -
Ssu5g1580 520 ProSiteProfiles IQ motif profile. 145 173 IPR000048 GO:0005515
Ssu5g1580 520 Pfam IQ calmodulin-binding motif 146 166 IPR000048 GO:0005515
Ssu5g1580 520 PANTHER IQ-DOMAIN 13 1 517 - -
Ssu5g1580 520 MobiDBLite consensus disorder prediction 324 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1580 Ssu-Chr5 49075846 49079858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1580 1 519 IQD Protein Family AT3G59690 51.064 2.92e-162 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1580 - - gmx:100807777 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1580 5 49075846 49079858 Ssu5g1580 5 49075846 49079858 ECH