Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1577 ATGATCGCGACCGTTGATTCCGCGCTCTTCGCTTTTCTGTTCCCCTCCCTGTGGGAGATCAAAGTCGCCGTCGCCGCCTCCGTCTTCGTCATCATCGCCTATCACTTCTTCGCCTCCCGCACCGGATACCTCTCCGCCGATCCGTCGCTTTCCGACAATTCCGCCGGCAATGTCGCCGACGATAAGGACAAGATGGGCCAGCCTAAAGTGGATTCTCAAACCAGTTCGGCGTACCTGATTAAGTTAGAACTATTGGCTGCTAAGAATCTCGTTGGTGCAAACTTAAATGGCACGTCGGATCCTTATGCTATCATCACATGTAGCAATGAAAAGCGATTCAGTTCCATGGTCCCTGGTTCAAGAAATCCAATGTGGGGCGAGGAGTTCAATTTTTCTGTTGATGAACTTCCTGTCCAGATCAATGTCACAATTTATGATTGGGATATAATTTGGAAAAGTACTGTTCTTGGTTCAGTGACTGTTCCAGTTGAAACTGAAGGACAAACTGGTGCAGTATGGCATACTTTGGATAGCCCATCAGGGCAGGTTTGTCttcatataaaaacaataaaactatcTGCAAATGCTTCCAGGATAAATGGTTACGGAGGAGCCAACCCTCGAAGAAGGATGCCGGAAAGACAGGGGCCTACTGTAGTCCATCAAAAGCCAGGGCCTCTTCAAACTATATTTGGTCTTCATCCTGACGAGGTTGTTGATCACAGTTATTCTTGTGCACTTGAGAGGTCATTCTTGTACCATGGTCGTATGTATGTCTCAGCATGGCACATTTGTTTCCATTCCAATGTGTTCTCGAAGCAAATGAAGGTGGTTATTCCATTTGAAGATATAGATGAGATTCGAAGGAGTCAACATGCATTTATTAATCCTGCTATAACAATTATTCTTCGCATGGGTGCTGGTGGACATGGTGTCCCTCCTTTGGGAAGTCCTGATGGTAGGGTCAGATACATGTTTGCATCATTTTGGAACAGGAATCATGCATTCAGAAATCTACAGCGTGCAGCAAAGAATTTCCATGAAATGTTGGAAGTGGAGAAGAAGGAAAATGCAGAGTCAGAGCTGCGTGCACATAGCAGTTCTGTCAGAGGAAGTAAGTTACTGGATAAGGTTCTTGAAGAAAGCATGCCAAAAACTGGAAAACTTCAACCTTTTATCAAAGAAGAGGCTTTAGTTGGTATATACAATGAAGTTTTTCCCTGCACAGCTGAACagttttttaacttattattaaatgatggttCAAATTTTACTAGCAAATATCGTTCAATACGTAAAGACACTAATCTTGTGATGGGCCAGTGGCATACGGCAGATGAATACGATGGTCAAGTCCGAGAGATAACCTTCAGATCCCTTTGTAACAGCCCTATGTGCCCCCCAGACACAGCTATGACAGAGTGGCAACATCATGTTCTATCACCAGACAAGAAAAATCTGGTGTTTGAGACTGTGCAACAGGCACATGATGTTCCATTCGGATCCTACTTTGAGGTACACTGTAAATGGAGTTTGGAGACGATTAATGAAAGCTCATGTACTCTGGACATAAAAGTGGGTGCACATTTCAAGAAATGGTGTGTTATGCAATCCAAAATAAAGTCAGGGGCAGTCAATGAGTACAAGAAAGAAGTTGATGTGATGTTAGATGTTGCTCGATcgtatataaaatcaaatacttCTAATGACGAGAATGATAAGGCCTCTTCGCCACCTGCAGCGACACTGGAAAACTAA 1758 0.4266 MIATVDSALFAFLFPSLWEIKVAVAASVFVIIAYHFFASRTGYLSADPSLSDNSAGNVADDKDKMGQPKVDSQTSSAYLIKLELLAAKNLVGANLNGTSDPYAIITCSNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSTVLGSVTVPVETEGQTGAVWHTLDSPSGQVCLHIKTIKLSANASRINGYGGANPRRRMPERQGPTVVHQKPGPLQTIFGLHPDEVVDHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHAFRNLQRAAKNFHEMLEVEKKENAESELRAHSSSVRGSKLLDKVLEESMPKTGKLQPFIKEEALVGIYNEVFPCTAEQFFNLLLNDGSNFTSKYRSIRKDTNLVMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLSPDKKNLVFETVQQAHDVPFGSYFEVHCKWSLETINESSCTLDIKVGAHFKKWCVMQSKIKSGAVNEYKKEVDVMLDVARSYIKSNTSNDENDKASSPPAATLEN 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1577 585 SMART gram2001c 225 291 IPR004182 -
Ssu5g1577 585 Pfam VAD1 Analog of StAR-related lipid transfer domain 401 546 IPR031968 -
Ssu5g1577 585 Pfam C2 domain 81 175 IPR000008 -
Ssu5g1577 585 CDD C2 80 176 - -
Ssu5g1577 585 Gene3D C2 domain 64 191 IPR035892 -
Ssu5g1577 585 ProSiteProfiles C2 domain profile. 64 176 IPR000008 -
Ssu5g1577 585 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 78 189 IPR035892 -
Ssu5g1577 585 Gene3D - 226 345 IPR011993 -
Ssu5g1577 585 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 8 579 - -
Ssu5g1577 585 MobiDBLite consensus disorder prediction 566 585 - -
Ssu5g1577 585 Pfam GRAM domain 228 296 IPR004182 -
Ssu5g1577 585 SMART C2_3c 79 175 IPR000008 -
Ssu5g1577 585 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 8 579 IPR044655 -
Ssu5g1577 585 ProSiteProfiles VASt domain profile. 397 567 IPR031968 -
Ssu5g1577 585 PRINTS C2 domain signature 95 107 IPR000008 -
Ssu5g1577 585 PRINTS C2 domain signature 140 148 IPR000008 -
Ssu5g1577 585 PRINTS C2 domain signature 119 132 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1577 Ssu-Chr5 49021776 49032733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1577 67 164 C2H2 Transcription Factor Family AT4G21160 23.469 1.15e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1577 - - gmx:100789923 1116.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1577 5 49021776 49032733 Ssu5g1577 5 49021776 49032733 ECH