Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1575 ATGATAGCCAGCTCCTTCTGCAATGCTGATTCTATGTTTTCAAGAGAAGAAGGGATAGATGTTAGAAAGATGATGGAACATAAAAGGGGTCCCTGCTCTGTTGACCAAAGCAGTTATACTTCTATTGCATCTAAAAGGCAAAAGGCTGATTTATCGATCAGCACTAAgGAGAGGAAGGAGAAGATTGGTGAACGAATTGTTGCTCTCCAGCAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCAATGGAATACATAGGATTCCTTCATAAACAAGTTAAGCTGCTCAGTGCTCCATACCTTGAAAGTTCACCAGCAGCCAAGATGCAGGGTATGGAGCCATGCAGCCTGAGGAGTAGAGGGTTATGTCTTGTTCCTGTCTCATTTACAATTGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCCATTAAGACTACTACTTCACCTAAATTCGAGAAGGATGTCTCGCAATTTCATTGA 504 0.4246 MIASSFCNADSMFSREEGIDVRKMMEHKRGPCSVDQSSYTSIASKRQKADLSISTKERKEKIGERIVALQQLVSPYGKTDTSSVLKEAMEYIGFLHKQVKLLSAPYLESSPAAKMQGMEPCSLRSRGLCLVPVSFTIGVAESNGADIWAPIKTTTSPKFEKDVSQFH 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1575 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 109 IPR036638 GO:0046983
Ssu5g1575 167 CDD bHLH_AtbHLH_like 52 103 IPR045239 -
Ssu5g1575 167 SMART finulus 52 101 IPR011598 GO:0046983
Ssu5g1575 167 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Ssu5g1575 167 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 149 - -
Ssu5g1575 167 PANTHER TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1 13 149 - -
Ssu5g1575 167 Gene3D - 43 114 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1575 Ssu-Chr5 49006843 49011153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1575 24 159 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 55.696 5.61e-55 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1575 - - gmx:100809747 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1575 5 49006843 49011153 Ssu5g1575 5 49006843 49011153 ECH