Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1574 atGGTGGGCCACTTCATCGTTTGCGTTGATCGGATTATAGCCTCCAAGGCCCGTTTTGGACCAATGGATGGAAGACAGTGTGATGGGGTTGACACAATAATACCCGTTTCTGACAATGGTGGAGAAGGGtgctcctcttcttcttcaaacaaggatgatgatgttgttgttgttgagtgcaGAATATGCCAGGAAGAAGATCAAGCACAAGCCATGGAGGCCCCTTGTTCTTGTAATGGCACTCTCAAGTTTGCTCATAGGAAGTGTATCCAGAGATGGTGCAATAAGAAAGGAAATACGATATGTGAAATTTGTAATCAGGCATTTTCACCAAATTATTCTCTTCCGCCAGTCAGAAGCAATGCAATTAGGGCAATTGATATAAGGCAAGAATGGGGGCATAATGTTGATCTCCATGTGGCTCTAGCTTCAGCAGAGCACCAGTTGCTACAAACTGAGTATGAAGATTATGCCATGACACAAACCAGTAGCATTGCTTGCCTTCGCTCTGTCACTCTCATTTTGCTGATAATTTTTCTTGTACGCCAAGCTTTAATGGTCACAAAGAACTCTGCAACTGGGCAAGAAGTATCATTAATCTTTAACTTTGAGATGTCACTCCTTCAATTTGCTGGTGCTCTTTTGCCATGCTATGCAATGGCACGTTCCTGGTATGTCATACAGAACCGAAGGAGAAGACAGGCTCACGAAAAATGGAGCAGTTACAAAGAGACACAGCATGCTTTTGTTTGTCAAACTTATTGA 765 0.4026 MVGHFIVCVDRIIASKARFGPMDGRQCDGVDTIIPVSDNGGEGCSSSSSNKDDDVVVVECRICQEEDQAQAMEAPCSCNGTLKFAHRKCIQRWCNKKGNTICEICNQAFSPNYSLPPVRSNAIRAIDIRQEWGHNVDLHVALASAEHQLLQTEYEDYAMTQTSSIACLRSVTLILLIIFLVRQALMVTKNSATGQEVSLIFNFEMSLLQFAGALLPCYAMARSWYVIQNRRRRQAHEKWSSYKETQHAFVCQTY 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1574 254 Pfam RING-variant domain 60 105 IPR011016 GO:0008270
Ssu5g1574 254 CDD RING_CH-C4HC3_MARCH 60 106 - -
Ssu5g1574 254 SUPERFAMILY RING/U-box 57 109 - -
Ssu5g1574 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 116 IPR013083 -
Ssu5g1574 254 SMART ringv_2 59 106 IPR011016 GO:0008270
Ssu5g1574 254 PANTHER OS01G0894600 PROTEIN 1 234 - -
Ssu5g1574 254 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 234 IPR033275 -
Ssu5g1574 254 ProSiteProfiles Zinc finger RING-CH-type profile. 52 112 IPR011016 GO:0008270
Ssu5g1574 254 Pfam Protein of unknown function (DUF3675) 111 224 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1574 Ssu-Chr5 48981155 48985495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1574 52 105 C3H Transcription Factor Family AT2G37950 41.667 2.40e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1574 - - gmx:100812120 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1574 5 48981155 48985495 Ssu5g1574 5 48981155 48985495 ECH