Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1573 ATGGCATCATCAAATAACCACTCACCGCCTCTGGAGATATTAGTTCGAGGGCCAGAAGAGTTCTCGCTCTGGACCGGACCCCCCTTCGCGAACGGTCAACCCGGCGTCAAACTCGAGAAAGTTAACTGCACGAACGCCAAGTTCAGCGACGACGGATCTAAACTCATGGTCACGAAATCCAACTCGGTGATTAGCGTGTACGATTGCGGCAGCGCCAAAGAGATTAGGTCTTTCGAAGTGCCCAATGTGGTAGCCGCTACCTTGTCGCCCTCTGGAACTTACTTGCAAACCTTTCAAAAGCCCTCGGCGCCGCAGGAGAAGAACGTGACGCTGTGGAAAATCGAGACCGGCGATCCCGTTTACCAACACTCCCAAAAGAACACGACAAAAGCCAATTGGCCTGCGATTCAATTTAGTTCTGATGAAGCTACTGCGTGTCGGTTGGCAACTAATGAGGTGCAATTTTTTGATACTGGGGATTTTTCGAAAGGAGTTGTCTGTCGGTTGAGAGTTCCGGGAGTTGCTGGCGCTGAGCTTTCTAGTTCACCGGGGTCTCATGTAGCTGCATTTGTTCCAGAATCCAAGGGGGTTCCTGCTAGTGTACAGATATATGCTTGTGGAAATGCTTCTCAAAGTCAACCTATTGCTCGACGTAGTTTTTTCCAATGTTCAACCACCCAACTTAAATGGAATCATGGCTCAACTGGGCTTCTAGTAGTGGTGCAGTCAGATGTTGACAAAACTAATCAGAGTTACTATGGAGAATCAAAGTTATGCTATCTGACTACAGATGGGATGCATGAAGGACTTGTGCCTCTTCGGAAAGATGGGCCTATTCATGATGCTCAGTGGTCATATTCTGGCTTGGAATTTGCTGTTGTATATGGGTTTATGCCTGCTAAAGCAACTCTGTTCGACAAGAAGTGCAATCCTCTACTAGAGCTTGGAACTGGTCCTTACAACACTATTCGTTGGAACCCAAAAGGGAAATTTTTGTGTTTGGCTGGATTTGGTAACTTGCCTGGTGATATGGTATTCTGGGATTACATAGATAAGAAACAACTTGGAACCACTAAGGCTGAATGGTCTGTGACAAGTGAATGGTCTCCAGATGGGTGCTATTTCATGACAGCAACAACAGCTCCAAGGCTTCAAGTTGACAACGgGATCAAGATTTTTCACTACAATGGGTTATTGTACTTCAAGAAGATGTTTGACAAATTGTACCAGGCTGATTGGAAACCAGAGTCACCAAGTAAGTTTGGTGATGTTGTCGaattaattaagtctctaaatttGGTACAACTTGAAGATAAAAAACCATCAGGTCAAGGACCAAAGTCAACCCAGACTTCTATAAAAGCCTCTTCTGCCAACCCCCCTGCACAAAAACCTGCTGCATATCGTCCTCCACATGCTAAGAATTCAGCTGCTATTCAGGCAGAGTTGTTTGGAGAGACTCCTGCAGAATCAATGAGCAAGAATGCATTACGAAAcaagaaaaagagggaaaaacaaaaggagaaaaaggcTGCTTCTGATGCCAGTTCTTCTTGA 1557 0.4419 MASSNNHSPPLEILVRGPEEFSLWTGPPFANGQPGVKLEKVNCTNAKFSDDGSKLMVTKSNSVISVYDCGSAKEIRSFEVPNVVAATLSPSGTYLQTFQKPSAPQEKNVTLWKIETGDPVYQHSQKNTTKANWPAIQFSSDEATACRLATNEVQFFDTGDFSKGVVCRLRVPGVAGAELSSSPGSHVAAFVPESKGVPASVQIYACGNASQSQPIARRSFFQCSTTQLKWNHGSTGLLVVVQSDVDKTNQSYYGESKLCYLTTDGMHEGLVPLRKDGPIHDAQWSYSGLEFAVVYGFMPAKATLFDKKCNPLLELGTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDYIDKKQLGTTKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGLLYFKKMFDKLYQADWKPESPSKFGDVVELIKSLNLVQLEDKKPSGQGPKSTQTSIKASSANPPAQKPAAYRPPHAKNSAAIQAELFGETPAESMSKNALRNKKKREKQKEKKAASDASSS 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1573 518 PIRSF Transl_init_eIF2A 5 518 IPR011387 GO:0003743|GO:0006413
Ssu5g1573 518 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2A 10 515 IPR011387 GO:0003743|GO:0006413
Ssu5g1573 518 Pfam Eukaryotic translation initiation factor eIF2A 218 411 IPR013979 -
Ssu5g1573 518 SUPERFAMILY DPP6 N-terminal domain-like 42 396 - -
Ssu5g1573 518 MobiDBLite consensus disorder prediction 442 459 - -
Ssu5g1573 518 Gene3D - 42 191 IPR015943 GO:0005515
Ssu5g1573 518 Coils Coil 494 514 - -
Ssu5g1573 518 MobiDBLite consensus disorder prediction 437 518 - -
Ssu5g1573 518 Gene3D - 194 407 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1573 83 419 Eukaryotic Initiation Factors Gene Family AT5G27640 24.523 3.68e-22 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1573 K15026 - gmx:100811589 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1573 5 48956766 48962999 Ssu5g1573 5 48956766 48962999 ECH