Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1560 ATGAGTGTTGGGCCGGGAATGGATATGCCGATCATGCATGACAGTGATCGCTATGAACTCGTGCGTGACATTGGTTCTGGCAATTTCGGTGTGGCCAGGCTTATGAGGGACAAGCACACAGAGGAACTTGTTGCTGTTAAGTATATTGAGAGAGGTGAAAAGATAGATGAAAATGTACAAAGGGAAATTATAAATCACAGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAGGTTATATTGACGCCAACGCATTTGGCAATTGTTATGGAATATGCTTCTGGAGGAGAGCTATTTGAGCGAATATGCAATGCAGGGCGGTTCAGTGAGGATGAGGCACGCTTCTTCTTCCAACAACTTATATCAGGAGTTAGCTATTGTCATGCAATGCAAGTATGCCATCGTGACTTGAAGCTGGAAAACACATTGTTGGATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGCTATTCAAAGTCCTCGGTGCTACATTCGCAACCAAAATCTACTGTTGGTACCCCAGCATACATCGCTCCTGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCGGATGTGTGGTCTTGTGGGGTGACCTTATATGTTATGTTGGTGGGTGCGTATCCTTTCGAGGATCCAGAGGAACCTAAAAATTTCCGCAAGACAATACATAGAATTTTGAATGTTCAGTACTCAATTCCTGACTATGTTCATATATCTCCCGAGTGCCGTCATCTGATGTCAAGGATTTTTGTTGCTGATCCTGCAAagAGAATAACTATTCCTGAGATTAGAAACCACGAGTGGTTTTTGAAGAACCTTCCAAGTGATCTCATGGATGGGAATACCAACAACCAGTTTGAGGAGCCTGATCAACCAATGCAAAGCATAGAAGAAATCATGCAGATAATTAGGGAGGCTACAATTCCTGCAGCTGGATCTCAGTCTCTCAACCATGACCTTGGTAGCTTGGATATTGATGAGGACATGGATTCGGATCCTGACCTTGACTTAGATAGCAGTGGAGAAATAGTGTATGCTATGTAA 1059 0.4297 MSVGPGMDMPIMHDSDRYELVRDIGSGNFGVARLMRDKHTEELVAVKYIERGEKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECRHLMSRIFVADPAKRITIPEIRNHEWFLKNLPSDLMDGNTNNQFEEPDQPMQSIEEIMQIIREATIPAAGSQSLNHDLGSLDIDEDMDSDPDLDLDSSGEIVYAM 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1560 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Ssu5g1560 352 PANTHER SERINE/THREONINE KINASE 10 347 - -
Ssu5g1560 352 CDD STKc_SnRK2-3 17 273 - -
Ssu5g1560 352 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Ssu5g1560 352 Gene3D Phosphorylase Kinase; domain 1 2 93 - -
Ssu5g1560 352 SMART serkin_6 18 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1560 352 ProSiteProfiles Protein kinase domain profile. 18 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1560 352 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E 10 347 - -
Ssu5g1560 352 Pfam Protein kinase domain 18 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1560 352 SUPERFAMILY Protein kinase-like (PK-like) 11 293 IPR011009 -
Ssu5g1560 352 Gene3D Transferase(Phosphotransferase) domain 1 94 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1560 Ssu-Chr5 48660636 48663470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1560 17 280 CBL-interacting serine-threonine protein kinases AT5G25110 44.727 1.83e-69 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Ssu5g1560 Pkinase 2.8e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1560 K14498 - gmx:100796253 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2457 2 82945747 82959500 Ssu5g1560 5 48660636 48663470 PCT