Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1559 ATGGGTTCGGTTCCCGCAGAACTGAGCTTGGATTTAAGACCCACCTTTGTCCCCAGAACGATCACTGATTTCCTCTGCGACCTCTCCTCCGCCCCCGACAAGCTCGCCACCCTCCACGATTTCCTCGCCCGATTGGAGGACGAGCTCCGCAAGATCGACGCCTTTAAACGCGAGCTCCCTCTCTCCATGCTCCTCTTAAACGACGCTATTTCAGTTCTCAAGGCGGAATCGCAAAAATGCAGGCCGCGTGATTCTCCGCCGGTGTTCGAGGAGTTCATTCCCTTGAAGAAAGAGCGTGATCACAGCGAGGAAAATAATATCAAGGACAACGAATGCAGGGACAAGAGGAATTGGATGAGTTCCGTTCAGCTCTGGAATAACACTACCACTAATAACAATGCCTGTGATCGGAAACAACTTCATAAATTAGAAACCAAGGTAGAATAA 447 0.5011 MGSVPAELSLDLRPTFVPRTITDFLCDLSSAPDKLATLHDFLARLEDELRKIDAFKRELPLSMLLLNDAISVLKAESQKCRPRDSPPVFEEFIPLKKERDHSEENNIKDNECRDKRNWMSSVQLWNNTTTNNNACDRKQLHKLETKVE 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1559 148 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 137 IPR044787 GO:0003700|GO:0006355
Ssu5g1559 148 PANTHER TRANSCRIPTION FACTOR HHO6 7 137 - -
Ssu5g1559 148 Coils Coil 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1559 Ssu-Chr5 48615686 48616226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1559 6 130 G2-like Transcription Factor Family AT2G03500 40.602 1.61e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1559 - - gmx:100806237 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2460 2 83053439 83053627 Ssu5g1559 5 48615686 48616226 PCT