Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1558 ATGCCTTTCTCTAGgtactcttcttcttcttcttccgtTCCTGTGACAACAGTGGCACTGGCAGCTGCGACcaaagaagagaaggaagagagTGTTATGAATAGGCTTTCTCTTCTGACCCCTTCTGTGAAAGAGGGATGCGGTTCCAGGGGGTCAAGAAGCAGTTCCAACAGGGctgtttcttcttctcctcctaCAGTTCAGCCGAGTTTGCGGGCAACGTCGCTTCAGCAGACTGCTAGGAAACAGAGGCGATGCTGGTCCCCTGAGTTGCACAGACGCTTTGTTAATGCCTTGCAGAAGCTAGGAGGTTCTCAAGTGGCAACGCCAAAGCAAATTAGAGAGCTCATGCAGGTTGATGGCCTGACTAACGATGAAGTGAAGAGCCATTTACAAAAATACCGACTTCATACACGGAGAGTTCCACCTGCCACTGCTAATCAGCCAGTTGTGGTTCTTGGAGGTTTGTGGATGTCTCAAGATCAGTACAATGACTCTTCAAAGGGTAGCAGTTCGGGGTCAGGTTCTCCTCAAAGTCCCCTTCATTTGGGTGCAGGGTCTCGGGGAGGGACATCCCCAACTGAGGGTGACAGCATCGAGGATGATGAAGATGCAAGATCCGAGAGTTATAGCTGGAAAAGTCACATGCACAAACCTGGAAAAGTTGATGTATAG 675 0.4533 MPFSRYSSSSSSVPVTTVALAAATKEEKEESVMNRLSLLTPSVKEGCGSRGSRSSSNRAVSSSPPTVQPSLRATSLQQTARKQRRCWSPELHRRFVNALQKLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPPATANQPVVVLGGLWMSQDQYNDSSKGSSSGSGSPQSPLHLGAGSRGGTSPTEGDSIEDDEDARSESYSWKSHMHKPGKVDV 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1558 224 MobiDBLite consensus disorder prediction 42 84 - -
Ssu5g1558 224 Pfam Myb-like DNA-binding domain 84 135 IPR001005 -
Ssu5g1558 224 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 82 137 IPR006447 GO:0003677
Ssu5g1558 224 SUPERFAMILY Homeodomain-like 79 140 IPR009057 -
Ssu5g1558 224 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 13 218 IPR044787 GO:0003700|GO:0006355
Ssu5g1558 224 PANTHER TRANSCRIPTION FACTOR HHO6 13 218 - -
Ssu5g1558 224 MobiDBLite consensus disorder prediction 47 84 - -
Ssu5g1558 224 MobiDBLite consensus disorder prediction 162 224 - -
Ssu5g1558 224 MobiDBLite consensus disorder prediction 162 181 - -
Ssu5g1558 224 Gene3D - 81 139 - -
Ssu5g1558 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 139 IPR017930 -
Ssu5g1558 224 MobiDBLite consensus disorder prediction 205 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1558 Ssu-Chr5 48613961 48615255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1558 78 158 G2-like Transcription Factor Family AT2G03500 75.581 3.39e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu5g1558 Myb_DNA-binding 1.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1558 - - gmx:100812420 367.851