Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1556 ATGACTTGCAAACTTGACATCTACTTCACTTTCTTCTCCTGTTTGCTTGTTAGCTTGGTTCCTCGTGTTCATATGTTTCCCTTTACTAAAAACCAGCTTGACGTCAATTTCTATGATGAATCATGCCCCAATTTGCCCATGATTGTTAGATATGGTGTTTGGTCAgccataaaaaatgataacagaATGGCCGCGTCCCTCCTTCGGTTGCACTTTCACGATTGCATAGTAAATGGCTGTGATACTTCGGTGCTGCTTGATGATACACCATATTTCACGGGCGAGAAGAATGCTTTTCCCAATCGCAATTCACTTCGGGGGTTTGAAATGATTGATAACATAAAAGAACAAGTTGAAAGGCTATGTCCATCAACAGTTTCCTGCGCTGATATTTTAGCCTTAGCAGTTAGGGAAGCTATTGATCTGGTTGGAGGGCCCTCTTGGCCTGTTGCATTAGGCCGAAGAGATGCAATAACAACCAGTCAGACAGCAGCTAATCAACAAATTCCCTCACCAATCGAGCCTCTAGATAACATCATTGCAAAGTTTGCTTCAAAGGGTCTTGACTTGAGGGATGTTGTAGCCCTCTCAGGTTTAGTCTTTTCTCAGTTAACATGA 618 0.4142 MTCKLDIYFTFFSCLLVSLVPRVHMFPFTKNQLDVNFYDESCPNLPMIVRYGVWSAIKNDNRMAASLLRLHFHDCIVNGCDTSVLLDDTPYFTGEKNAFPNRNSLRGFEMIDNIKEQVERLCPSTVSCADILALAVREAIDLVGGPSWPVALGRRDAITTSQTAANQQIPSPIEPLDNIIAKFASKGLDLRDVVALSGLVFSQLT 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1556 205 PRINTS Haem peroxidase superfamily signature 144 156 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu5g1556 205 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu5g1556 205 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu5g1556 205 SUPERFAMILY Heme-dependent peroxidases 32 198 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu5g1556 205 ProSiteProfiles Plant heme peroxidase family profile. 32 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu5g1556 205 PANTHER PEROXIDASE 72-RELATED 14 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g1556 205 PANTHER PEROXIDASE 10 14 198 - -
Ssu5g1556 205 PRINTS Plant peroxidase signature 191 203 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g1556 205 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g1556 205 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g1556 205 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g1556 205 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g1556 205 PRINTS Plant peroxidase signature 125 135 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu5g1556 205 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601
Ssu5g1556 205 Gene3D - 36 169 - -
Ssu5g1556 205 Pfam Peroxidase 53 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu5g1556 205 Gene3D Peroxidase, domain 2 170 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1556 Ssu-Chr5 48552833 48554960 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1556 24 198 Peroxidase AT1G49570 64.000 4.88e-78 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1556 K00430 - gmx:100805171 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2464 2 83162451 83164353 Ssu5g1556 5 48552833 48554960 PCT