Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1549 ATGGGGGTTTGCACTTCGAAGCCGCCGAAGCCGAACCCTTACGCGCTTCGCGAGACAGAAGCCGACCCTTCGCAAATCCCGAAAACCCCACTCAGCCCCAACGCCGCCGACAACCACCGCCGGAAAGATGACGTCACCGCCGGAAAGCAGTCGCCGTTCTTCCCGTTCTACAGCCCGAGCCCGGCTCGCTTCCTGAAGAAGTCTCCGGCGCAGGCGGGAGGGAGCCAGAGCGTGAGCTCCACGCCTAGGAGGTTCTTCCGGCGGCCGTTCCCGCCGCCGTCGCCGGCGAAGCACATAAGGGCGGTGCTGGCGCGGCGGCAGGGGAAGAAGGAGGCGGCGGCGGCGATACCGGAGGAGGGGGAGGAGGGTGGCGGAGTCGCGGCGGATTTGGATAGGAGGTTTGGGTTCTCGAAGGAGTTCACTAGTAGGTTGGAGGTTGGCGAAGAAGTGGGTCGAGGGCATTTTGGGTATACTTGTTCTGCTAGGTTCAAGAAGGGTGAGCTTAAGGGTCAGCAAGTGGCGGTTAAGGTCATACCAAAAGCAAAGATGACAACAGCAATTGCTATTGAAGATGTGAGAAGGGAGGTGAAAATACTGCGAGCTTTGAACGGACACAGTAATCTGATACAGTTCTATGATGCATTTGAAGACCAAGAGAATGTCTACATTGTAATGGAGTTATGTGAAGGGGGGGAGCTCTTAGATATGATACTGTCAAGaGGAGGGAAATACTCAGAAGATGATGCAAAGGCTGTCATGGTACAGATACTAAATGTTGTTGCATTTTGTCATCTTCAAGGTGTGGTGCACCGAGATCTTAAGCCAGAGAATTTTTTGTATACTAAAAAGGATGAAAGTTCTGAGTTGAAAGCTATAGACTTTGGGTTATCAGATTTTGTCAGACCAGATGAAAGGCTTAATGATATTGTTGGAAGCGCATACTATGTGGCCCCTGAAGTTCTCCATAGATCTTATAGCACAGAGGCGGATGTGTGGAGTGTAGGCGTGATAGCATATATTCTATTATGTGGTAGTCGCCCATTTTGGGCTCGAACGGAGTCTGGTATTTTTAGGGCAGTTTTGAAAGCTGATCCAAGCTTTGAGGAAACACCGTGGCCATCTTTATCTTTAGAAGCAAAGGATTTTGTCAAACGCTTATTGAATAAGGATCCACGGAAGCGAATATCTGCTGCTCAGGCTCTAAGTCATCCTTGGATACGGAATTACAATAACGTAAAAGTTCCACTTGATACTTTAATATTTAAGCTCATGAAGACATATATGAGATCATCATCCTTACGCAAGGCTGCCTTAAGGGCCTTGTCAAAAACATTGACTGCAGATGAACTCTATTATCTGAGGGAGCAATTTGCACTGCTAGAACCAAGCAAAAATGATAGCATAACTTTAGAGAATGTTAACAAGGCCTTGATTAAATATGCAACAGATGCCATGAAAGAGTCTCGCATCCCTGACTTTCTTTCATCACTGAATTCATTGCAATATAGAAGGATGgattttgaagaattttgtgCAGCTGCATTAAGTGTGCATCAACTTGAAGCTCTTGATCGTTGGGAACAACACGCCCGCTGTGCGTATGAACTTTTTGAGAAAGACGGAAACAGGGCTATTGTCATTGAAGAGCTTGCTTCAGAACTCGGACTTGGTCCCTCTATCCCTGTTCATGTTGTTCTTCATGACTGGATACGCCACACTGATGGGAAATTGAGCTTTCTAGGGTTTGTCAAATTATTACACGGTGTATCTAGCCGAAGCCTTGCAAAggttcaataa 1797 0.4691 MGVCTSKPPKPNPYALRETEADPSQIPKTPLSPNAADNHRRKDDVTAGKQSPFFPFYSPSPARFLKKSPAQAGGSQSVSSTPRRFFRRPFPPPSPAKHIRAVLARRQGKKEAAAAIPEEGEEGGGVAADLDRRFGFSKEFTSRLEVGEEVGRGHFGYTCSARFKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALNGHSNLIQFYDAFEDQENVYIVMELCEGGELLDMILSRGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTKKDESSELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSVGVIAYILLCGSRPFWARTESGIFRAVLKADPSFEETPWPSLSLEAKDFVKRLLNKDPRKRISAAQALSHPWIRNYNNVKVPLDTLIFKLMKTYMRSSSLRKAALRALSKTLTADELYYLREQFALLEPSKNDSITLENVNKALIKYATDAMKESRIPDFLSSLNSLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSLAKVQ 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1549 598 PANTHER CDPK-RELATED KINASE 2 39 592 - -
Ssu5g1549 598 Gene3D Transferase(Phosphotransferase) domain 1 233 423 - -
Ssu5g1549 598 SUPERFAMILY Protein kinase-like (PK-like) 140 441 IPR011009 -
Ssu5g1549 598 PANTHER SERINE/THREONINE-PROTEIN KINASE 39 592 - -
Ssu5g1549 598 SMART serkin_6 144 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1549 598 Pfam Protein kinase domain 145 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1549 598 ProSitePatterns Protein kinases ATP-binding region signature. 150 176 IPR017441 GO:0005524
Ssu5g1549 598 Gene3D - 424 585 - -
Ssu5g1549 598 ProSiteProfiles Protein kinase domain profile. 144 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1549 598 CDD STKc_CAMK 145 405 - -
Ssu5g1549 598 MobiDBLite consensus disorder prediction 1 93 - -
Ssu5g1549 598 Gene3D Phosphorylase Kinase; domain 1 146 232 - -
Ssu5g1549 598 Gene3D - 446 515 - -
Ssu5g1549 598 SUPERFAMILY EF-hand 434 588 IPR011992 -
Ssu5g1549 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1549 Ssu-Chr5 48434873 48440296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1549 1 594 EF-hand Containing Proteins AT3G50530 72.082 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu5g1549 Pkinase 3.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1549 K00924 - gmx:100798913 1085.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2465 2 83174147 83178812 Ssu5g1549 5 48434873 48440296 PCT