Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1545 ATGGCTCAACCCAGCACCAACGGCGATCTGAACCAGCAGGgtcagcagcagcagcagcagcagcagtgGGCGCAGCCGCATCAGTATCAGCAGCAATGGATGGCCATGCAGTACCCCGCCACCGCCATGGCCATGATGCAGCAGCAGATGATGATGTACCCCCAGCATTACATGCCCTATGTCCACCACCAGTAcccgccgccgccgccaccgCCGCCGCAccacccccaccaccaccacaaacAACCCGCCGCCTCCTCCGACGAGATCAGGACCATCTGGCTCGGCGACCTCCACCATTGGATGGACGAGAACTACATCCATAACTGCTTCGCTCACACCGGCGAGGTTGTGTCAGCCAAGGTCATACGGAATAAGCAAACTGGTCAGTCCGAGGGATATGGATTCGTGGAGTTCTATTCGCGGGCAACAGCTGAGAAAGTCTTGCAGAACTATAATGGCACGATGATGCCGAATACAGATCAGGCATTTCGTCTGAATTGGGCCACATTCAGTGCCGGAGAGAGGCGTTCTGGCTCTGATGCTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCCATAGATGTTACTGATGCTATGCTGCAAGAGACTTTTGCTGGCAGATATTCCTCTATCAAGGGAGCTAAAGTTGTCATTGATTCTAATACTGGCCGTTCAAAGGGCTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGAACAAGGGCAATGACTGAAATGAATGGCGTTTATTGTTCTAGTAGGCCCATGCGAATAGGTGTTGCAACTCCCAAGAAAACTTATGGCTATCAACAACAATATTCTTCTCAAgCTGTGGTGCTGGCTGGTGGACACTCAGCTAATGGGGCTATGGCCCAAGGTTCCCAGTCTGAAGGGGATTTAAACAACACTACTATATTTGTTGGAGGGCTTGATTCTGATATTAGTGATGAGGACCTCAGACAACCATTTATGCAATTTGGTGGGGTTGTCTCTGTGAAAATTCCAGTGGGTAAAGGGTGTGGATTTGTTCAATTTGCTGACAGAAAGAATGCTGAGGAAGCAATTCAGGCATTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGAACTGATTCCAATGGAGGCCATTATGGTGGTCAGGGTTATGGAGGCCATGGATTTGCTGTGAGACAGAATCAGGATATAGCCATGCAACCTGCTGCTGCAATTCAAGGGGCTTCCTGA 1269 0.4626 MAQPSTNGDLNQQGQQQQQQQQWAQPHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYVHHQYPPPPPPPPHHPHHHHKQPAASSDEIRTIWLGDLHHWMDENYIHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSAGERRSGSDATSDLSIFVGDLAIDVTDAMLQETFAGRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGHSANGAMAQGSQSEGDLNNTTIFVGGLDSDISDEDLRQPFMQFGGVVSVKIPVGKGCGFVQFADRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRTDSNGGHYGGQGYGGHGFAVRQNQDIAMQPAAAIQGAS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1545 422 CDD RRM1_SECp43_like 92 172 - -
Ssu5g1545 422 Gene3D - 90 170 IPR012677 -
Ssu5g1545 422 SUPERFAMILY RNA-binding domain, RBD 186 379 IPR035979 GO:0003676
Ssu5g1545 422 MobiDBLite consensus disorder prediction 1 23 - -
Ssu5g1545 422 Gene3D - 172 278 IPR012677 -
Ssu5g1545 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 160 IPR000504 GO:0003723
Ssu5g1545 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 257 IPR000504 GO:0003723
Ssu5g1545 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 370 IPR000504 GO:0003723
Ssu5g1545 422 Gene3D - 286 409 IPR012677 -
Ssu5g1545 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 171 IPR000504 GO:0003723
Ssu5g1545 422 CDD RRM2_SECp43_like 185 264 - -
Ssu5g1545 422 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 20 421 - -
Ssu5g1545 422 SUPERFAMILY RNA-binding domain, RBD 53 172 IPR035979 GO:0003676
Ssu5g1545 422 MobiDBLite consensus disorder prediction 64 87 - -
Ssu5g1545 422 CDD RRM3_NGR1_NAM8_like 304 375 - -
Ssu5g1545 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 377 IPR000504 GO:0003723
Ssu5g1545 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 265 IPR000504 GO:0003723
Ssu5g1545 422 SMART rrm1_1 92 167 IPR000504 GO:0003723
Ssu5g1545 422 SMART rrm1_1 187 261 IPR000504 GO:0003723
Ssu5g1545 422 SMART rrm1_1 306 373 IPR000504 GO:0003723
Ssu5g1545 422 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 20 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1545 Ssu-Chr5 48376863 48380262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1545 73 384 Eukaryotic Initiation Factors Gene Family AT4G34110 29.338 1.04e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1545 - - gmx:100798089 662.144