Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1540 ATGACCCCCATCGTCAACGCTTCAATTTCGTGGCTGAGGAAGAAGCTGAAGGACTCGATAGACAACTTCAACAGCCTCAGACAACAGATATTGTCGAAGTATAAGGAAAGTGTGCAGCGTAGATACTACACCTCAGATGACACGAATATGTCTGCCACCGGCGTGGACAGTTTCAACGGAACGTTTTCAGCATGTTCACATGTTGAAATATTTGGCGGAAGAGGCTGTCAATTCTCAGTAGGAAAAGAAATTCGCCACCGGCGAAAGCGAATTCTCAGTCGGCCTGAAGGAGTGCGTGCCGGTCACAACGAGTACTCAGTTGCAAAATGCCATTTTGAATCTTCCGTCGTGTTGCGGAGGAAAACAGGGCGCGAGAGCTCTGCTTGCGCGGTGCAATGTTAG 402 0.49 MTPIVNASISWLRKKLKDSIDNFNSLRQQILSKYKESVQRRYYTSDDTNMSATGVDSFNGTFSACSHVEIFGGRGCQFSVGKEIRHRRKRILSRPEGVRAGHNEYSVAKCHFESSVVLRRKTGRESSACAVQC 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1540 133 Pfam Syntaxin 7 91 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1540 Ssu-Chr5 48261564 48262434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1540 9 105 SNARE and Associated Proteins AT3G11820 33.000 4.99e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1540 K08486 - psom:113313587 63.5438