Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1538 ATGCAAATTTCGGGAAAGTGTTCATCGCCGGTGACAGCTGCGGGTGCCAACATTGTAAGCTACTTGGGCATTCGGGTTGGGACGGAAGGGTTACATGGTGTGAAACAGCTTCAAGGGATTGTTTTGATTCATCCCTTTTTTTGGGGAGAGGAACCGATTGGGTGCGAGGCAAATCGGCCTGAACAAGCTAAGAAGATACACGATTTGTGGCGGTTTGCATGCCCAAGCGCGAGTGGATCCGACGACCCGATAGTCAACCCGGGTAAGGATCCGAAGGTGGGGAACCTAGCTTGTGGAAGATTGCTTCTTTGTGTTGCCGAAAAGGATTTGGTGAGGGACAGGGGTTTGTACTACAAAGAATTACTTGACAAAAATGGGTGGTATGGAGTTGTGGAGGTGGTGGAGGCAAAGGATGAGGACCATGTGTTTCATTTGTTCAAACCAAACTGTGAGAATGCTCAGGTTTTGCTCAACCAAATTGTTTCCTTCCTCAAACAGGACTGA 504 0.4841 MQISGKCSSPVTAAGANIVSYLGIRVGTEGLHGVKQLQGIVLIHPFFWGEEPIGCEANRPEQAKKIHDLWRFACPSASGSDDPIVNPGKDPKVGNLACGRLLLCVAEKDLVRDRGLYYKELLDKNGWYGVVEVVEAKDEDHVFHLFKPNCENAQVLLNQIVSFLKQD 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1538 167 PANTHER ARYLACETAMIDE DEACETYLASE 12 165 - -
Ssu5g1538 167 Gene3D alpha/beta hydrolase 13 167 IPR029058 -
Ssu5g1538 167 Pfam alpha/beta hydrolase fold 14 144 IPR013094 GO:0016787
Ssu5g1538 167 SUPERFAMILY alpha/beta-Hydrolases 14 166 IPR029058 -
Ssu5g1538 167 PANTHER CXE CARBOXYLESTERASE 12 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1538 Ssu-Chr5 48259679 48260182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1538 13 165 Carbohydrate Esterase AT3G48690 41.875 1.08e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1538 - - gmx:100800733 287.345