Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1522 AtgtcttcctcctcctccttctcccCAGCCACTCTCACCACCGAGCAAGAGCTCTCCGTCATCGTCGCCGCCCTCACCAACGTCGTCGCCGGCGCCACCTCCTCGGACTCCGTCTCCGTCTCGGACTTCCGCCTCCCGCAGACGTCGGAGGCCCTCGCCGGGACCAGCTTCGACAGGATAGTGCCGCCGCCGGCGAGCATGGACACGTGTCGTGAGTGCAACATCGCGGGGTGCCTGGGGTGCAACTTCTTCCccgaggagaagaagaagcagaaGAGGGCCAAGAAGAAGTACCGCGGCGTGAGGCAGAGGCCCTGGGGGAAATGGGCCTCGGAGATCCGGGACCCGCGCCGAGGGGCCCGAGTCTGGCTCGGGACATTCAACACCGCCGAGGAAGCGGCCCGGGCCTACGACAAGGCCGCGATCGAGTTCCGCGGCCCACGGGCCAAGCTCAATTTCCCGCTCGTGGACGAGTCGCTGAGCTTGCAGCGGAGCGAGCCAGAGAGGGTTAACGCGGAAGAACAAATAAAGGACGAGAATCACAATCAGGGTAGTACGGAAATGGACACACTCGGGTTTGGGAACAAGGATACCGAATTCTGGGATAGGATTGGCGATGCCGATTTTCAACAGCTTATGATGATGATGGATTTTGCTGGGGATTCCTCCGACTCTGCCACTGGGAACACTCTTAGTTCGTGA 702 0.5783 MSSSSSFSPATLTTEQELSVIVAALTNVVAGATSSDSVSVSDFRLPQTSEALAGTSFDRIVPPPASMDTCRECNIAGCLGCNFFPEEKKKQKRAKKKYRGVRQRPWGKWASEIRDPRRGARVWLGTFNTAEEAARAYDKAAIEFRGPRAKLNFPLVDESLSLQRSEPERVNAEEQIKDENHNQGSTEMDTLGFGNKDTEFWDRIGDADFQQLMMMMDFAGDSSDSATGNTLSS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1522 233 Gene3D AP2/ERF domain 96 156 IPR036955 GO:0003700|GO:0006355
Ssu5g1522 233 ProSiteProfiles AP2/ERF domain profile. 97 154 IPR001471 GO:0003700|GO:0006355
Ssu5g1522 233 SUPERFAMILY DNA-binding domain 97 155 IPR016177 GO:0003677
Ssu5g1522 233 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Ssu5g1522 233 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
Ssu5g1522 233 SMART rav1_2 97 160 IPR001471 GO:0003700|GO:0006355
Ssu5g1522 233 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 5 229 - -
Ssu5g1522 233 CDD AP2 98 154 IPR001471 GO:0003700|GO:0006355
Ssu5g1522 233 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 229 - -
Ssu5g1522 233 Pfam AP2 domain 97 146 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1522 Ssu-Chr5 47973012 47973713 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1522 12 162 AP2-EREBP Transcription Factor Family AT4G34410 46.667 1.04e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu5g1522 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1522 - - gmx:100820426 355.525