Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1509 ATGGCTACCCCAAGTAAATCAACACCAATAATATCTTCAGACACTTTGGAACCTAAAGGGAAGACTATGACTGAATCAAATGCAAACATTCTTCAATGTCCTGTAAACCAGCAACTCCATAGCTCCTTAGATGGCCCAGTAGCAATCCTTTGGGATATTGAAAATTGTCCTGTTCCAAGTGATGTACGCCCTGAAGATGTAGCGGGTAATATAAGAATGGCTTTGCGGGTGCACCCAGTAATTAAAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAATTCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGTGTCAAACTTATTGATGTTCCCAATGGGAGAAAAGATGCTGCTGATAAAGCTATCTTGGTCGACATGTTCTTATTTGCTCTTGACAACCCTCCACCATCGTCTATCATGCTTATATCTGGAGATGTTGATTTTGCACCTGCACTTCACATTCTTGGTCAGCGGGGATATACTGTTATTCTTGTCATCCCTGCTGGGGTGGGTGTTTCTTCTGCCCTATGCAATGCTGGTAAATTTGTCTGGGACTGGCCTAGTGTTGCTCGTGGAGAAGGCTTTGTGCCCCCGTCAAAGGCTTTAGTGCCACCCCGTGGAGGTCCAATTGAGCTTGCTGGATATTTGATGGGGTGCCATATCAATGATTACTCTGATGtacaaaatgaagaagaagcAATAGTTTATAGAGGGATGTCACAGAGCTATTATAACTCAAGGGAATTCTCAGTGGTGTCACAATCTCTGTCTGAATACAACTGTGGCACATCGAACATGACTTGTTTGCCAACAACTATGAGATCATATAGCCTTCCATCTGGATTGAATGATGTTCCAGGAGCATCTATGCCTTCAAGTGACCATAATGAATGCCAGTTATGGGTACAGCCTGGGGATTTAAATGGTCTCAAGGGGCAGCTGGTAAGGCTGCTCGAACTTTTTGGAGGATGCCTGCCTCTGGCCCGAGTTCCAGCAGAGTACCAGAAAATTTATGGGAGACCTCTTTATGTAGCTGAATATGGGGCAATAAAGTTGGTCAATCTTTTCAAAAAGATGGGTGATGTCATGGCTGTGGAAGGGAAAGGGAATCGTAAATTTGTGTATCTCAGAAACTGGAAGGCAGGCCCAAGTGCTCCTCCTCTCTCTCTGGCAAAGAAAGATAAGAAAGGAAAGGGAGCCCAGGAAGAGAATGTGAATGTTGTCACTGGTGGATGCTCTTCAGATGAGTTCTCTGATGAAGAAAGAGTGGTCATGGAAGAACATGATGAAAGAAGTTGCACAGGAAAGAGCAATCGAGGGAAAGCAGCCAAATGCGAAGGTGGTGACCGTCTTATTGAGCAGTTCAAGTATGAGCTGCAAGAGATTCTAGTAAGCTATTCTTGTCGAATATCCCTAGATTGTTTTGAGGATATATACCAGCAGCGATACAAGAAACAACTGGAATATCAGAAATTTGGTGTGGACAAGTTGGAAGATTTGTTTGAGAAAGTGAGTGATGTGGTGGCATTGCATGAGGAAACAGTAAGCAAGAGGAAGTTCCTGCCTGCTGTGGGTGGTTAG 1596 0.4373 MATPSKSTPIISSDTLEPKGKTMTESNANILQCPVNQQLHSSLDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIKGAVMMFSAYGDFNSFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALCNAGKFVWDWPSVARGEGFVPPSKALVPPRGGPIELAGYLMGCHINDYSDVQNEEEAIVYRGMSQSYYNSREFSVVSQSLSEYNCGTSNMTCLPTTMRSYSLPSGLNDVPGASMPSSDHNECQLWVQPGDLNGLKGQLVRLLELFGGCLPLARVPAEYQKIYGRPLYVAEYGAIKLVNLFKKMGDVMAVEGKGNRKFVYLRNWKAGPSAPPLSLAKKDKKGKGAQEENVNVVTGGCSSDEFSDEERVVMEEHDERSCTGKSNRGKAAKCEGGDRLIEQFKYELQEILVSYSCRISLDCFEDIYQQRYKKQLEYQKFGVDKLEDLFEKVSDVVALHEETVSKRKFLPAVGG 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1509 531 ProSiteProfiles OST-type HTH domain profile. 311 383 IPR025605 -
Ssu5g1509 531 CDD LOTUS 312 381 - -
Ssu5g1509 531 Pfam NYN domain 46 186 IPR021139 GO:0004540
Ssu5g1509 531 MobiDBLite consensus disorder prediction 1 21 - -
Ssu5g1509 531 Gene3D - 43 192 - -
Ssu5g1509 531 CDD LOTUS 457 518 - -
Ssu5g1509 531 Gene3D - 453 522 IPR041966 -
Ssu5g1509 531 Gene3D - 311 380 IPR041966 -
Ssu5g1509 531 PANTHER LIMKAIN B LKAP 36 526 IPR024768 GO:0005777|GO:0010468|GO:1903231
Ssu5g1509 531 Pfam OST-HTH/LOTUS domain 314 379 IPR025605 -
Ssu5g1509 531 Pfam OST-HTH/LOTUS domain 457 517 IPR025605 -
Ssu5g1509 531 CDD PIN_limkain_b1_N_like 46 172 - -
Ssu5g1509 531 ProSiteProfiles OST-type HTH domain profile. 456 530 IPR025605 -
Ssu5g1509 531 PANTHER - 36 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1509 Ssu-Chr5 47670480 47672075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1509 43 197 C2H2 Transcription Factor Family AT5G61190 41.935 3.95e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1509 - - gmx:100818186 986.482