Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1508 ATGCTCTTCAGGCTTGCCTCTTTGTTGGGATTGTTGGCTTTTCTTGGAACGCAGCTTCCTGTCATAATGGCTGATTGCCCATTGGACTTTACTGATTCAAACTTCACACTGGCATCCTCTCTATGCTCTAACCATGGTGACAGGGGAAAATGTTGCCGCTACATTAATACTAACGTTGCAATTTCTGTTGCTCATTTTGCTAATGAAACAGGCAACCTAGGGGTCCCTCCAAATGCCTCTGACATCTGCCTGCAAACTATATCTCAAACCTTGCTACTTTATGGAGTTGCCCAAAATGCAACAGCTTTCTGTGGTTTCGGGACAAAAATTCCTGTTAATTATGAATGCAAGGGGAGAACTAGTGTTGTCCATATGCTGCAATCCCCCAGATTTACGGAGGTCACAAAAAACTGCAAAGTGCCACTTGGAGAGGAAAGTAAATGTAAGAAGTGCTTAAATGCTGGAATTGGTTATCTGCATCATCTCGGAATTGAAGATAATATAACACTGAGTACATGTCGTGATGCCACTTTTGCTGCACTAGCAAGCCAAGTTGACAAGATATCTACTATTGACATTGCAAGTTGTTTCTTTGGAGTTCAAGAACTTCTCAGGTCTCCTGTTTCAGCGTCATCCCCATCCTTGCCTGCTCCTAAGGCTTCTCCAAGCCCACTTGTTGCTGATGGCCCAAGTCAACCATTGTTAAGTGCACCTTTAAAGGGAAACCACCATTCATATCATTTGACATTAGTTCCAGGTATTGCTATTGCAGTTACAGCTGTTGCTGTTATCACACTCATAGTCTTGATAGTTCTAATTCGCCAGAAAAGCAGAGAGCTAGACGAGTCTGATAATTTTGGTAAAACCTGTTCGAAAACCTTACCTCCTTGTGCAACATGGAAATTTCAGGAAGGTTCTTCATCTATGTTCCGAAAATTCAGCTACAGGGAGATAAAAAAGGCAACAGAGGATTTTAGCACTATCATTGGCCAAGGGGGATTTGGAACAGTGTATAAAGCTCATTTTTCTGATGGCCTGGTTGCAGCAGTAAAGCGGATGAACAGAATCTCTGAGCAGGGGGACGATGAGTTCTGCAGAGAAATTGAGCTTCTTGCTCGGCTGCACCATCGGCATCTTGTTGCTTTAAAAGGATTTTGCATTAAAAAACGTGAGAGGTTTCTGTTGTATGAGTACATGGGAAATGGAAGCTTGAAAGATCATCTTCATTCCCCTGGTAAAACACCATTAAGTTGGCGAACTAGAATCCAAATTGCGATTGATGTGGCCAATGCACTGGAGTACCTCCATTTCTATTGTGATCCTCCTCTGTGTCACAGAGATATTAAATCTAGCAACACTTTACTGGATGAGAACTTTGTTGCTAAGATTGCTGATTTTGGCCTTGCACAAGCTTCAAAAGATGGTTCAATATGCTTTGAACCTGTAAACACTGAAATCCGGGGAACTCcagGTTATATGGATCCTGAATATGTTGTTACTCAAGAGCTCACCGAGAAAAGCGATATATACAGTTTTGGGGTGTTACTACTTGAAATTGTGACAGGAAGACGAGCCATTCAAGATAATAGGAATTTGCTAGAATGGGCACAACCATACATGGAATCAGAAACGAGATTATTGGAGCTAGTAGATCCCAATGTGAGGGAGTCTTTTGACTTGGATCAGCTCCAAACAGTAATATCTATAGTAGGATGGTGCACCCAGAGAGAGGGAAGGGCAAGGCCTTCAATAAAACAGGTACTTAGGCTTCTGTATGAGACATCAGAACCAATTCACAGTGAGTTTCTACAAGCTGTTGAAGATGAAGAATGTCAGGGAAGTCAGCATAGAGGCAGAAGAAGCAAAGGGAAAATGCTCAGAAATGAAGCAACGTTTCACAGCGGAGATGGAAGATATCTTGCTTCATCTTCGAGTACATCTCGGTCATATTGCAGTAGAAGCTTTTTACTCGAGAGTGGCTCTCCACAGTCCCCGCCAAATATGTTCTCTGTCTGA 2016 0.4236 MLFRLASLLGLLAFLGTQLPVIMADCPLDFTDSNFTLASSLCSNHGDRGKCCRYINTNVAISVAHFANETGNLGVPPNASDICLQTISQTLLLYGVAQNATAFCGFGTKIPVNYECKGRTSVVHMLQSPRFTEVTKNCKVPLGEESKCKKCLNAGIGYLHHLGIEDNITLSTCRDATFAALASQVDKISTIDIASCFFGVQELLRSPVSASSPSLPAPKASPSPLVADGPSQPLLSAPLKGNHHSYHLTLVPGIAIAVTAVAVITLIVLIVLIRQKSRELDESDNFGKTCSKTLPPCATWKFQEGSSSMFRKFSYREIKKATEDFSTIIGQGGFGTVYKAHFSDGLVAAVKRMNRISEQGDDEFCREIELLARLHHRHLVALKGFCIKKRERFLLYEYMGNGSLKDHLHSPGKTPLSWRTRIQIAIDVANALEYLHFYCDPPLCHRDIKSSNTLLDENFVAKIADFGLAQASKDGSICFEPVNTEIRGTPGYMDPEYVVTQELTEKSDIYSFGVLLLEIVTGRRAIQDNRNLLEWAQPYMESETRLLELVDPNVRESFDLDQLQTVISIVGWCTQREGRARPSIKQVLRLLYETSEPIHSEFLQAVEDEECQGSQHRGRRSKGKMLRNEATFHSGDGRYLASSSSTSRSYCSRSFLLESGSPQSPPNMFSV 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1508 671 MobiDBLite consensus disorder prediction 609 628 - -
Ssu5g1508 671 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Ssu5g1508 671 Pfam SPARK 25 160 IPR043891 -
Ssu5g1508 671 Gene3D Phosphorylase Kinase; domain 1 297 398 - -
Ssu5g1508 671 SUPERFAMILY Protein kinase-like (PK-like) 305 593 IPR011009 -
Ssu5g1508 671 Gene3D Transferase(Phosphotransferase) domain 1 399 614 - -
Ssu5g1508 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Ssu5g1508 671 CDD STKc_IRAK 329 591 - -
Ssu5g1508 671 ProSiteProfiles Protein kinase domain profile. 323 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1508 671 PANTHER OS01G0750732 PROTEIN 5 671 - -
Ssu5g1508 671 Pfam Protein kinase domain 327 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1508 671 SMART serkin_6 323 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1508 671 PANTHER BNAC06G02630D PROTEIN 5 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1508 Ssu-Chr5 47663579 47669699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1508 24 670 Receptor kinase-like Gene Family AT3G19300 62.058 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Ssu5g1508 Pkinase 2.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1508 - - gmx:100807955 1191.41