Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1505 ATGCCAGGGAGTTTAGAACCGTTGGATTTGGGGGTTCACATACCATACCACTTCAGGTGCCCAATCTCGCTGGAACTCATGCGAGACCCCGTCACGGTGTGCACCGGTCAAACCTACGACCGAGCCAGCATCGAGTCATGGGTTGGCACAGGCAACACCACGTGCCCCGTCACACGAGCCACGCTCACCGACTTCACCCTAATCCCGAACCACACCCTACGCCGCCTTATCCAAGAGTGGTGCGTCGCTAACCGCGCTTTTGGCGTCGAGCGAATCCCCACTCCCAAACAGCCTGCAGACCCCGCCTTAGTTCGCTCCCTTCTCAACCAAACATCCTCTGCTTCCGCCCCCACTCACCTTCGCCTCTCCTCGCTCCGCCGACTCGGACAACTTGCTCGCGACTCGAACACGAATCGTTCCCTCATTGCCTCTCACAACGTCCGCCAGATCCTTCTCTCTATCGTTTTCAACGCTTCCGACGAGTTGAGCCGTGAGTCGCTCGCGCTGCTCGTTCTGTTCCCACTCGGCGAGTCTGAATGCGCCGCGCTCGCCTCTGACTCAGAAAAGATCAACTACCTCGCGCGGTTGCTGTCTCACGACTCGCTCGACGTCCGAGTCAACTCGGCCGCGTTAATCGAGATCGTCGTCGCCGGGACGCACTCGCTGGAGCTCCGCGCGCAGGTGAGCAATGTCGGCGAAATCTATGACGGCGTCGTGGACCTGCTCCGGAACCCGATCTTGTACCCGCGCGCGCTCAAGGTCGGGATCAAGGCCTTGTTCGCGCTGTGTCTGGTGAAGCAGACGTGGCAGAAAGCGGTGGCCGCCGGGGCGCCGGCGGTGCTCGTCGATCGGCTTGCGGACTTCGAGAAGTGCGACGCGGAGAGGGCGCTGGCCACGGTGGAGCTCCTCTGCGGGATTCCGGCGGGGTGCGCAGCGTTCGCCGGCCATGCGCTCACGGTGCCGATGCTGGTGAAGATAATTCTGAAGATTTCCCATCGTACGACGGAGTACGCCGCCGGAGCGCTGTTGTCGCTATGCTCGGAATCGGAGCGGTGCCAGCGGGAGGCGGTGGCAGCGGGGGTGCTGACTCAGCTTCTGCTTCTAGTGCAGAGCGATTGTACGGAGAGAGCGAAGAGGAAGGCGCAGATGTTGCTGAAGCTTCTTCAGGATTCGTGGCCGCAAGATTCCATCGAAAATTTTGACGATTTTGCATGCGGTCAGGTCGTTGTGGTTCTCTTTTGa 1242 0.6063 MPGSLEPLDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRASIESWVGTGNTTCPVTRATLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQTSSASAPTHLRLSSLRRLGQLARDSNTNRSLIASHNVRQILLSIVFNASDELSRESLALLVLFPLGESECAALASDSEKINYLARLLSHDSLDVRVNSAALIEIVVAGTHSLELRAQVSNVGEIYDGVVDLLRNPILYPRALKVGIKALFALCLVKQTWQKAVAAGAPAVLVDRLADFEKCDAERALATVELLCGIPAGCAAFAGHALTVPMLVKIILKISHRTTEYAAGALLSLCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQMLLKLLQDSWPQDSIENFDDFACGQVVVVLF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1505 413 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 409 - -
Ssu5g1505 413 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Ssu5g1505 413 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Ssu5g1505 413 CDD RING-Ubox_PUB 18 59 IPR045210 -
Ssu5g1505 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Ssu5g1505 413 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Ssu5g1505 413 Gene3D - 91 400 IPR011989 -
Ssu5g1505 413 SUPERFAMILY ARM repeat 103 389 IPR016024 -
Ssu5g1505 413 SUPERFAMILY RING/U-box 12 90 - -
Ssu5g1505 413 PANTHER WDSAM1 PROTEIN 4 409 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1505 Ssu-Chr5 47574172 47575413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1505 1 408 U-box Gene Family AT1G49780 64.916 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1505 - - gmx:100778730 709.909