Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1502 ATGGCAAAAGATCAAGATTCACATGATATGGACTTCTTATTGGGAAACCATTCATGGGGTCCCCCCAATTTTGATAACTTGGGTGAAAGCAAAGAGAACATGAAGCCACCAAATCAGAAAAAAGAAGGTAAAGATCTCATGAATAAGAGAAACCAAGAGATCACtagtgaaaatgaaaagaaaattattactaGTGGCGAAGGGTCAGATGGAAAGTATTTGGAATCTGATCGTGAAATGCATCTATCgattgagagagaaaggagaaagaaaatgaaggacaTGTTTAGTAGTCTTCATGCTTTGCTTCCACAGCTTCCTCCTAAGGCGGATAAATCAACCATTGTCAATGAAGCAGTGAACTACATCAAAGATCTGCAGCAAACCCGCGAAAAGCTAGAGAAACAGAAACAAGAAAGGCTCCAGTGTGTTTCGGTCCCTGTGCAGCAGCAAGTAGCTTTTGATAAAACGTGGGCTTCTCCAAATATGGTCTTGAACATTTGTGGAGAAGAGGCCCACTTTTGCATGTACTCAGCCCATAAGCCAGGCCTCATGACCACCATTGCTTCTGTGCTGGAGAAGCACAAGATAGAGGTCATATCTGCCAGCATGTCCTGCAATGATAATGGAAATGGAAATACATGCATGATTCAAGTCCATGGAAAACAAGATGCAAACTCAGTGGAGGAAACTTACAAGCAAGCGGCTGAAGAGATTTTGCTAGGAATCGTTTGA 735 0.3918 MAKDQDSHDMDFLLGNHSWGPPNFDNLGESKENMKPPNQKKEGKDLMNKRNQEITSENEKKIITSGEGSDGKYLESDREMHLSIERERRKKMKDMFSSLHALLPQLPPKADKSTIVNEAVNYIKDLQQTREKLEKQKQERLQCVSVPVQQQVAFDKTWASPNMVLNICGEEAHFCMYSAHKPGLMTTIASVLEKHKIEVISASMSCNDNGNGNTCMIQVHGKQDANSVEETYKQAAEEILLGIV 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1502 244 SMART finulus 82 132 IPR011598 GO:0046983
Ssu5g1502 244 Pfam Helix-loop-helix DNA-binding domain 78 127 IPR011598 GO:0046983
Ssu5g1502 244 PANTHER - 154 241 IPR044278 GO:0003700|GO:0006355|GO:0009960
Ssu5g1502 244 PANTHER - 31 145 IPR044278 GO:0003700|GO:0006355|GO:0009960
Ssu5g1502 244 MobiDBLite consensus disorder prediction 34 57 - -
Ssu5g1502 244 Gene3D - 69 142 IPR036638 GO:0046983
Ssu5g1502 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 126 IPR011598 GO:0046983
Ssu5g1502 244 MobiDBLite consensus disorder prediction 1 77 - -
Ssu5g1502 244 CDD ACT 180 230 - -
Ssu5g1502 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 148 IPR036638 GO:0046983
Ssu5g1502 244 MobiDBLite consensus disorder prediction 63 77 - -
Ssu5g1502 244 Coils Coil 116 143 - -
Ssu5g1502 244 CDD bHLH_AtbHLH_like 81 134 IPR045239 -
Ssu5g1502 244 PANTHER TRANSCRIPTION FACTOR BHLH95 154 241 - -
Ssu5g1502 244 PANTHER TRANSCRIPTION FACTOR BHLH95 31 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1502 Ssu-Chr5 47537456 47543674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1502 152 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.052 1.33e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g1502 HLH 4.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1502 - - ccaj:109816148 275.404