Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1501 ATGGCCTTGACTGTAGAAGATCAAGGTTTGCATGATATGAGCTTCTTGTGGGAAAACCATTCATGGGGTCCCTCCAATTCTGACAACTCCGGTGAAAGTAAAGAGAACATAAACCCACTAAAtcgaaaagaagaaagagatgaagCTCTCATGAATAAGAAGCGAAATCGAGACCAAACCAAAATTACTAGTGGTGAAGGGAAAGATGAAAAATGTCGCGAACCTGATCATGAAATGCATATATGGACggagagagaaaggaggaagaaaatgaagaacatGTTTGCTAGTCTTCATGCTTTGCTTCCGCATCTTCCTTCTAAGGCGGATAAATCAACCGTTGTCGATGAAGCAGTGAACTACATTAAAAATCTACAGCAAACCCTCGAAAAGCTAGAGAAACAGAAACAAGAAAGGCTCCAATATGTCTCCACTTTTGGGTGTGAGTCATCTATGTTTGTCACTTATCAGGGATCTTCTAATAACTTTTCCAATGCAATGATGGGAACTTCAAATGAACTTTTAGTCCCTGTTCAGCAGCCAGTAGCTTTTGATAAAACGTGGGCTTCTTCAAATATGGTCTTGAACATTTGTGGAGATGAAGCCCAATTCACCATTTGCGCAGCCCATAAGCCAGGCCTCATGACCACCATCGCTTTTGTGCTGGGCAAGTACAAGATAGAGGTCGTATCTGCTATCATTTCTAGCATTGGAAATGGAAATGCATGCATGATTCAAGCCCATGGAAAACGAGCTTCGCATCAGTTCCTAGACGCAAATTTAGTGGAGGAAATTTACAAGCAAGTGGCGGGAGAGATTATGCTGTGGAtcgcttaa 837 0.3895 MALTVEDQGLHDMSFLWENHSWGPSNSDNSGESKENINPLNRKEERDEALMNKKRNRDQTKITSGEGKDEKCREPDHEMHIWTERERRKKMKNMFASLHALLPHLPSKADKSTVVDEAVNYIKNLQQTLEKLEKQKQERLQYVSTFGCESSMFVTYQGSSNNFSNAMMGTSNELLVPVQQPVAFDKTWASSNMVLNICGDEAQFTICAAHKPGLMTTIAFVLGKYKIEVVSAIISSIGNGNACMIQAHGKRASHQFLDANLVEEIYKQVAGEIMLWIA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1501 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 138 IPR036638 GO:0046983
Ssu5g1501 278 CDD ACT_UUR-ACR-like 203 239 - -
Ssu5g1501 278 Pfam Helix-loop-helix DNA-binding domain 80 126 IPR011598 GO:0046983
Ssu5g1501 278 PANTHER - 13 276 IPR044278 GO:0003700|GO:0006355|GO:0009960
Ssu5g1501 278 PANTHER TRANSCRIPTION FACTOR BHLH95 13 276 - -
Ssu5g1501 278 MobiDBLite consensus disorder prediction 37 73 - -
Ssu5g1501 278 Gene3D - 67 141 IPR036638 GO:0046983
Ssu5g1501 278 Coils Coil 115 142 - -
Ssu5g1501 278 CDD bHLH_AtbHLH_like 80 133 IPR045239 -
Ssu5g1501 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 125 IPR011598 GO:0046983
Ssu5g1501 278 SMART finulus 83 131 IPR011598 GO:0046983
Ssu5g1501 278 MobiDBLite consensus disorder prediction 22 36 - -
Ssu5g1501 278 MobiDBLite consensus disorder prediction 22 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1501 Ssu-Chr5 47519767 47525797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1501 18 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 38.384 6.79e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g1501 HLH 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1501 - - gmx:102665879 442.58