Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1500 ATGCTTCTGCTAAAGTTTAGGTGGGATAGCTTGATTCTGATGCAAGGTCAAAGGAGGACTATTGGATCATTGCCAGCAATTGTTAGTATGATGCAAGGACCCAGTTCTAGTGGCACTGATATGAATCATCAGACTTCCTTGAATCATGTGCAAAATGCAGTAGATTTCCGGTTGTCAGATTATAGGGGATCTTCTGGTGAGACTGCATGTTTACGTGGTACTGGTCATAATGTTCAGAGCTTCAGTGGCTGGAATACTGGTGAATCTAGTTCTAGACTGAATCTGATCAACCAAGTCAATGATGAAGGTCGAAAATCAGAACATGGTCTGTCTTCTTCATGTAATGCTACTACTGAGGATGGTCTCAGGTCTGAGGAAAGACAATTTGAAccaaataatgtaatttttcctGTTAGTTCAAATACATTACATGGCAATCAATCTAGAGGTCACTCTTCCTTTTTGCAAGGTTCCAGTTCTAATCATATTACCCAGAATATTAGTCTAGATATGGGGCACATTGCTAACGCTGCTGATCGTGGGAAGGGCAAAGAAGCAGGTAGTAGTATTAATGACAACAATACTAATGGATTAGATAGAGAAAAAACATTGTTTGGAAGTGCTTCATGTAATCACATAGGAGCTTCATCTGAAAGCTCTGGCTACGTGGCTTGGGGTGATAGTGCTAGTTCAGGTTCTTCTTTAGTTAATTGGGGTCCTTCCTGCAAGAGAAAGGCTCTTGAAGGTAGTTCTATGCAACTGTGCACTGGAGGAAGCTCAAACACTCTTGTTCAATCTGAAAATGGTTGCTGGCCTACTGATCCTGTTGATCTTAATGCTTCTAGCGGCTTAAGTGATGCTTCACCTTTGGAGGATATTCCTGTTACCAGTCCTCCATTATTGCAGAACACAAGAAATGATGTGAGACACGAAGCTTCCAATGCATTTCCTTTGATAAGTATTGCGGAAAATGTGGAAAGGCCTCTAAGAAATGTTGATAGAAGAATGAGCCAACTACAGCATCAGGAATCTGTACCTCTCAATTTACCATCAACAGGGAGTGCTAGGCATCATAATCATTCTTCTCTGCATCAAATACCTGGCTCTCACTCAGTCAATGATTCATTGGAATTGAGGTTAACAGCTGGACTAACAACTGCTAATTCTGGCGCTGGTTTGAACCAGTCACCTGCGCTGCGCATCCATTCTTTTCCTTGGAACAGAACTGTCAATCCTAGAGGGGCCAGATCTTCAACTTCTTACAACTCTGGAGAAAGAGCTGTCCGGGaagattttaatttgagaatGTTTCCAAGAGATGGTATTGAGCACCCCATGAATGTGCCTGCATCTTCAGGACATGAACCTTCAGGTTGGCATACACCATCTGGTAATGTGAACAATTCTGGAGGTGTACCTCCTACACCCTGGATTGGATCTAGTTCAAATGCCCACTCATCACCTAACCCTAGCTGGATCTTTAATCATGAAGTCCCAGCAGAAAATATGCAGAGTGTGTCAGAGTTCAGTCCTTGGTCCCTTTTTCCATCAATTAGCTCTGCATCTGGTGTTCATAATGGCCATTCTAGCCCATCTCCTTCTGGTCCTCCTTCATTTACCCAGGGTTCTAGCAGCAATCAACCATATCTAAGAACAGCATTGTTGATGGAAAGAAGGAGTGGTGATGTTCTCTCTGGTCCCCATTCACTGCGAGCATTAACCTTTGACAGTGAGGGGAGACGCCGACTAATATCTGAGATTCGCCAAGTCTTGATGGCAATGCGGAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCCTATATCATGGCATGGCTGAAATGCATGACAGGCACAGAGAAATGCGCCTTGATGTGGACAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAGCGGATAGGAGATGTGAGCACTGGGTTGAGTGAGGATATCATTATTAAGTTGATGAAACAGCGAATTTACATGCCTGTCATGACTGAGTCTTCTACAGATCTGGAACCTTGCTGTATCTGTCAGGAGGAATTTGCTGATGGAGAGAATGTTGGATCACTGGATTGTGGGCATGAGTTCCACAGTGCCTGCATCAAGCAGTGGCTAATGCAGAAGAACCTGTGCCCCATATGCAAAACAACAGCCTTAGCTACATGA 2184 0.4309 MLLLKFRWDSLILMQGQRRTIGSLPAIVSMMQGPSSSGTDMNHQTSLNHVQNAVDFRLSDYRGSSGETACLRGTGHNVQSFSGWNTGESSSRLNLINQVNDEGRKSEHGLSSSCNATTEDGLRSEERQFEPNNVIFPVSSNTLHGNQSRGHSSFLQGSSSNHITQNISLDMGHIANAADRGKGKEAGSSINDNNTNGLDREKTLFGSASCNHIGASSESSGYVAWGDSASSGSSLVNWGPSCKRKALEGSSMQLCTGGSSNTLVQSENGCWPTDPVDLNASSGLSDASPLEDIPVTSPPLLQNTRNDVRHEASNAFPLISIAENVERPLRNVDRRMSQLQHQESVPLNLPSTGSARHHNHSSLHQIPGSHSVNDSLELRLTAGLTTANSGAGLNQSPALRIHSFPWNRTVNPRGARSSTSYNSGERAVREDFNLRMFPRDGIEHPMNVPASSGHEPSGWHTPSGNVNNSGGVPPTPWIGSSSNAHSSPNPSWIFNHEVPAENMQSVSEFSPWSLFPSISSASGVHNGHSSPSPSGPPSFTQGSSSNQPYLRTALLMERRSGDVLSGPHSLRALTFDSEGRRRLISEIRQVLMAMRRGENLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDIIIKLMKQRIYMPVMTESSTDLEPCCICQEEFADGENVGSLDCGHEFHSACIKQWLMQKNLCPICKTTALAT 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1500 727 MobiDBLite consensus disorder prediction 521 546 - -
Ssu5g1500 727 MobiDBLite consensus disorder prediction 410 426 - -
Ssu5g1500 727 ProSiteProfiles Zinc finger RING-type profile. 680 721 IPR001841 -
Ssu5g1500 727 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 15 727 IPR045191 GO:0061630
Ssu5g1500 727 MobiDBLite consensus disorder prediction 407 426 - -
Ssu5g1500 727 CDD RING-H2_TTC3 679 721 - -
Ssu5g1500 727 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 15 727 - -
Ssu5g1500 727 Pfam Ring finger domain 680 721 IPR001841 -
Ssu5g1500 727 SUPERFAMILY RING/U-box 664 724 - -
Ssu5g1500 727 MobiDBLite consensus disorder prediction 454 486 - -
Ssu5g1500 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 725 IPR013083 -
Ssu5g1500 727 MobiDBLite consensus disorder prediction 336 370 - -
Ssu5g1500 727 SMART ring_2 680 720 IPR001841 -
Ssu5g1500 727 MobiDBLite consensus disorder prediction 338 370 - -
Ssu5g1500 727 MobiDBLite consensus disorder prediction 443 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1500 Ssu-Chr5 47504243 47512647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1500 31 727 C3H Transcription Factor Family AT2G15530 37.926 2.42e-121 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1500 - K19041 gmx:100809024 1315.44