Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1499 ATGGCAAACAACGGGGATCAACAACAGCAAACTGAAGCTGGAAGGCACCAAGAGGTTGGTCACAAGAGCCTTCTCCAAAGTGATGCTCTTTACCAGTATATTCTGGAGACAAGTGTCTACCCAAGAGAACATGAAGCCATGAAAGAATTGAGAGAGTTGACAGCAAAACACCCATGGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACTTGCTCCTTAAGCTTATCAATGCCAAGAATACCATGGAAATCGGTGTCTACACTGGGTATTCTCTGCTTGCCACCGCCCTCGCTCTTCCTGAAGATGGAAAGATCTTGGCCATGGACATTAACAGGGAGAATTACGAGCTGGGTTTGCCTGTAATAAAGAAAGCTGGTGTTGACCACAAAATTGAATTCAGAGAAGGCCCTGCTCTCCCAGTTCTCGATGAAATGGTTAAAGACGAAAAGAACCATGGGAGCTATGATTTCATCTTTGTGGACGCGGATAAGGACAACTACCTCAACTACCACAAGAGGTTGATCGAGCTTGTCAAAGTTGGAGGCGTGATCGGGTACGACAACACCTTATGGAACGGATCTGTGGTAGCACCCCCCGATGCCCCACTTAGGAAGTATGTTAGGTATTACAGGGACTTCGTGTTGGAGCTCAACAAGGCCTTGGCTGAGGACCCCAGGATTGAAATTTGCATGTTACCGGTTGGTGACGGAATCACTCTCTGCCGTCGGATCAAGTGA 747 0.4739 MANNGDQQQQTEAGRHQEVGHKSLLQSDALYQYILETSVYPREHEAMKELRELTAKHPWNIMTTSADEGQFLNLLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIKKAGVDHKIEFREGPALPVLDEMVKDEKNHGSYDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAEDPRIEICMLPVGDGITLCRRIK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1499 248 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 246 IPR029063 -
Ssu5g1499 248 Pfam O-methyltransferase 36 247 IPR002935 GO:0008171
Ssu5g1499 248 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 23 247 IPR002935 GO:0008171
Ssu5g1499 248 PANTHER O-METHYLTRANSFERASE-RELATED 7 248 - -
Ssu5g1499 248 Gene3D Vaccinia Virus protein VP39 22 248 IPR029063 -
Ssu5g1499 248 CDD AdoMet_MTases 86 187 - -
Ssu5g1499 248 PANTHER CAFFEOYL-COA O-METHYLTRANSFERASE 1 7 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1499 Ssu-Chr5 47463187 47464569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1499 4 247 Monolignol Biosynthesis Gene Families AT4G34050 88.525 4.82e-168 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1499 K00588 - gmx:100811247 465.692