Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1498 ATGACGCAGGGGCAAGAGCTGGAGCAGGTTCAGTGCTTCGGTCGCAAGAAGACCGCGGTGGCGGTGACGTACTGCAAGCGCGGGCGCGGCCTGATCAAGATCAACGGCTGCCCCATCGAGCTGGTCGAACCGGAAATCCTCCGGTTCAAGGCGTTCGAGCCGATCCTCCTCCTGGGCAAGAGCCGGTTCGCAGGCGTGGACATGCGAATCCGCGTGAAGGGCGGCGGGCACACCTCCCAGATTTACGCCATTCGGCAGAGCATCGCGAAGGCCCTCGTGGCGTTCTACCAGAAGTACGTCGACGAGCAGAGCAAGAAGGAGATCAAGGACATCCTCGTCAGGTACGACCGCACGTTGCTCGTTGCCGACCCCAGGCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGCGCCCGCGCCAGGTTCCAGAAGTCTTACCGTTGA 441 0.6304 MTQGQELEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1498 146 Pfam Ribosomal protein S9/S16 14 146 IPR000754 GO:0003735|GO:0005840|GO:0006412
Ssu5g1498 146 PANTHER - 4 146 - -
Ssu5g1498 146 ProSitePatterns Ribosomal protein S9 signature. 74 92 IPR020574 GO:0003735|GO:0005840|GO:0006412
Ssu5g1498 146 Gene3D - 2 146 IPR014721 -
Ssu5g1498 146 PANTHER RIBOSOMAL PROTEIN S9 4 146 IPR000754 GO:0003735|GO:0005840|GO:0006412
Ssu5g1498 146 SUPERFAMILY Ribosomal protein S5 domain 2-like 9 146 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1498 Ssu-Chr5 47434325 47434765 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1498 1 146 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 86.301 5.10e-92 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1498 K02960 - gmx:100779794 281.182