Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1495 atGGCTCAGGTTCAGGTCCCGCCTCAGAATGCGATGTCAGGTCCCAACGGTGCTGCTGGTGCTGGTGGTGGAAACCAGTTCGTGACGACGTCGCTTTACGTAGGAGATCTCGACCCGAACGTCACGGACTCGCAGCTCTATGACTTCTTCAACCAATTGGGCCAAGTCGTGTCTGTTAGGGTTTGCAGGGATTTGACCACTCGGAGATCACTTGGTTACGGTTACGTCAACTATAGCAACCCGCAAGATGCTGCCAGAGCATTGGATGCTCTGAACTTCACTCCTCTCAATAACAAGCCCATCCGTATTATGTATTCACATCGTGATCCAAGTATCCGTAAAAGTGGGGCaggaaatatatttattaagAATTTGGATAGGGCAATTGACCACAAGGCATTACATGATACCTTCTCTACATTTGGGAATATCCTTTCATGCAAGGTAGCTACGGATTCATCTGGGCAATCGAAAGGCTATGGCTTTGTTCAATTTGATAATGAGGAATCTGCCCAAAAAGCCATAGAGAAGCTGAATGGTATGCTGTTGAATGATAAACAAGTGTATGTGGGACCCTTCCTTCGCaagcaagagagagaaagtgctaTTGACAAGGAAAAATTTAACAATGTTTTTGTAAAGAATCTATCTGAATCAACCACTGATGATGAATTGAAGAATATTTTTGGCGAATTTGGAGCTATTACTAGCGCTGTAGTGATGAGGGATGGAGATGGGAAATCAAAGTGTTTTGGATTTGTAAATTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGAGGCTGTCAATGGCAAACAATTTGATGACAAGGAATGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAGCATGAATTGAAACTCCGATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCAAACTTGTATGTCAAAAATTTAGACGATAGCATTGGTGATGATAAACTTAAGGAGCTGTTCTCCCCTTTTGGTACCATTACCTCTTGCAAGGTTATGAGAGACCCAAATGGCATAAGTCGTGGATCAGGATTTGTTGCATTCTCGACTCCTGAGGAGGCATCCAGAGCActCTTGGAGATGAATGGCAAAATGGTGGTAAGCAAACCTCTGTATGTGACTCTCGCCCAACGGAAAGAAGATAGAAGAGCTAGACTGCAGGCTCAGTTTGCTCAAATGCGACCTGTTGGAATTCCACCATCTGTTGGTCCTCGTGTACCAATGTATCCCCCAGGTGGTCCTGGTATTggtcaacaaatattttatggCCAAGGCCCTCCTGCTATCATTCCTTCCCAGCCTGGATTTGGGTATCAACAACAACTTGTGCCCGGTATGAGGCCAGGTGCGGCTCCTGTGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGACAACAGGGACAGCGTCCTGGTGGAAGGCGTGCAGTCCAGCAGTCCCAGCAGGCAGTTCCAATGATGCCACAGCAGATGCTTCCTAGGGGGCGTGTCTATCGTTATCCTCCTGGTAGGGGTATTCCTGATGTTCCTATGCCTGGGGTTGCTGGAGGTATGTTTTCTGTTCCATATGATGTGGGTGGGATGCCGCTGCGTGATGCATCACTCTCCCAGCAAATTCCTATTGGGGCTTTGGCATCAGCTCTGGCTAATGCTTCTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTACCCCCTTGTGGAACAGTTAGAGCCCGATAATGCTGCTAAAGTGACAGGCATGCTTCTTGAGATGGACCAGACTGAAGTTTTGCATTTGCTCGAGTCACCAGAAGCCCTGAAAGCAAAGGTGGCTGAGGCAATGGACGTCCTAAGGAATGTTGCTCAGCAGCAGCAGGCTGGCAGTGCTGCTGACCAGCTGGCTTCGTTATCACTCAATGACAACCTtgtttcttaa 1950 0.4574 MAQVQVPPQNAMSGPNGAAGAGGGNQFVTTSLYVGDLDPNVTDSQLYDFFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDALNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAIDKEKFNNVFVKNLSESTTDDELKNIFGEFGAITSAVVMRDGDGKSKCFGFVNFENADDAARAVEAVNGKQFDDKEWYVGKAQKKSEREHELKLRFEQSMKEAADKYQGANLYVKNLDDSIGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGIPPSVGPRVPMYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGAAPVPNFFVPMVQQGQQGQRPGGRRAVQQSQQAVPMMPQQMLPRGRVYRYPPGRGIPDVPMPGVAGGMFSVPYDVGGMPLRDASLSQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQAGSAADQLASLSLNDNLVS 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1495 649 SUPERFAMILY PABC (PABP) domain 491 643 IPR036053 GO:0003723
Ssu5g1495 649 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 31 623 IPR006515 GO:0003723
Ssu5g1495 649 CDD RRM1_I_PABPs 31 110 - -
Ssu5g1495 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 190 IPR000504 GO:0003723
Ssu5g1495 649 SMART rrm1_1 313 385 IPR000504 GO:0003723
Ssu5g1495 649 SMART rrm1_1 119 191 IPR000504 GO:0003723
Ssu5g1495 649 SMART rrm1_1 31 104 IPR000504 GO:0003723
Ssu5g1495 649 SMART rrm1_1 210 282 IPR000504 GO:0003723
Ssu5g1495 649 Gene3D - 295 397 IPR012677 -
Ssu5g1495 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Ssu5g1495 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Ssu5g1495 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Ssu5g1495 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Ssu5g1495 649 SMART poly_2 562 625 IPR002004 GO:0003723
Ssu5g1495 649 Pfam Poly-adenylate binding protein, unique domain 558 622 IPR002004 GO:0003723
Ssu5g1495 649 CDD RRM3_I_PABPs 208 287 - -
Ssu5g1495 649 Gene3D - 546 629 - -
Ssu5g1495 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Ssu5g1495 649 Gene3D - 194 294 IPR012677 -
Ssu5g1495 649 CDD RRM2_I_PABPs 116 192 IPR045305 -
Ssu5g1495 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Ssu5g1495 649 MobiDBLite consensus disorder prediction 1 20 - -
Ssu5g1495 649 PANTHER POLYADENYLATE-BINDING PROTEIN 19 632 - -
Ssu5g1495 649 PANTHER RNA BINDING PROTEIN 19 632 - -
Ssu5g1495 649 Gene3D - 119 191 IPR012677 -
Ssu5g1495 649 SUPERFAMILY RNA-binding domain, RBD 208 391 IPR035979 GO:0003676
Ssu5g1495 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 550 627 IPR002004 GO:0003723
Ssu5g1495 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Ssu5g1495 649 SUPERFAMILY RNA-binding domain, RBD 30 199 IPR035979 GO:0003676
Ssu5g1495 649 Gene3D - 25 118 IPR012677 -
Ssu5g1495 649 CDD RRM4_I_PABPs 311 389 - -
Ssu5g1495 649 SMART rrm2_1 210 282 IPR003954 GO:0003676
Ssu5g1495 649 SMART rrm2_1 313 385 IPR003954 GO:0003676
Ssu5g1495 649 SMART rrm2_1 119 191 IPR003954 GO:0003676
Ssu5g1495 649 SMART rrm2_1 31 104 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1495 Ssu-Chr5 47391876 47396686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1495 29 648 Eukaryotic Initiation Factors Gene Family AT1G49760 74.566 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1495 K13126 - gmx:100780329 1162.13