Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1483 ATGGTTTTATTTAAGCACCCTTCTGTTTCAACACTCCTCACCTTATTCCTTCTTTGCCTTCTCTTAGTAGATTGCCAAATCCTTGAAACTCCATCACCACTACCCGATTCAACCCCATTAGTCCCTGACATTTTAAACTTCTTAGACCGGCGGCTCGCTCAGGTCTTCCCAATTATTCAAACCTTTAAGAACACAATAACCTCAGACCCTTTTGGAGTAACAACAACATGGGTTGGTCCAAATATATGCAACTACACAGGCTTCTATTGTGACAACCCACCGGACAACCTCACCGCCATAACCATTGCCTCAATTGATTTCAATGGCTTTCAACTCTTCGCACCAACCCTTGACGGGTTCATCGACCAACTCCCTGACTTGGCTCTTTTCCACGCAAACACCAACAAATTCTCGGGCACCATTTCGCCAAAAATAGCGGGACTCAAGTTCCTATACGAACTTGATTTAAGTAACAACTTGCTCTCTGGGGTATTCCCCACATCGGTCCTAAACATCCCCTCCTTGTCCTTCTTGGACATTAGGTACAACTTTTTCACCGGCACCGTGCCCCCACAAATTTTCGTGCAAACATTAGATGTACTTttcctcaacaacaacaatttcatGCTGACACTGCCCAACAATCTAGGAGACACACCGGTGGTTTATCTCACGTTGGCTAACAACAAATTCACGGGCCCCATTCCCCGCAGCATTAGAAAAGCCTCATCCACGTTGATCGAAGTGTTACTATTGAACAACCTTTTAACGGGTTGTCTTCCCTACGAGATTGGGTTCCTAGGAAATGTGACACTGTTTGATGCTGGTGGGAACCTCTTGACTGGGCCGATACCATGGTCCTTTGGGTGCTTGAAGAAAGTGGAGCAGCTGAACCTGGCTAGGAACTTTTTGTATGGACAGGTTCCGGAAGTGGTGTGTGCGTTGGGGAATTTGGCGAATCTTTCGTTGTCCTATAATTATTTCACGAGAGTGGGGCCCTTGTGCAAGAAGCTGATTCAAAGGGGGGTTCTTGATGTGAGGaagaattgtatttttggtcttccGGATCAGAGATCAGTGAAGGAGTGTATGGCGTTCTTTTTGATTCCAAGATCTTGTTCGCTCCCTGCGTCATCGTTTAATATCATGCCGTGTGAGATTCATCGGACGAAACCGCGGGAGAGAACTAGGAGGCATTTGCTGTCATATTCTGCTCTTTCCAGAAATAGAGTAGTTTTGTAA 1242 0.4444 MVLFKHPSVSTLLTLFLLCLLLVDCQILETPSPLPDSTPLVPDILNFLDRRLAQVFPIIQTFKNTITSDPFGVTTTWVGPNICNYTGFYCDNPPDNLTAITIASIDFNGFQLFAPTLDGFIDQLPDLALFHANTNKFSGTISPKIAGLKFLYELDLSNNLLSGVFPTSVLNIPSLSFLDIRYNFFTGTVPPQIFVQTLDVLFLNNNNFMLTLPNNLGDTPVVYLTLANNKFTGPIPRSIRKASSTLIEVLLLNNLLTGCLPYEIGFLGNVTLFDAGGNLLTGPIPWSFGCLKKVEQLNLARNFLYGQVPEVVCALGNLANLSLSYNYFTRVGPLCKKLIQRGVLDVRKNCIFGLPDQRSVKECMAFFLIPRSCSLPASSFNIMPCEIHRTKPRERTRRHLLSYSALSRNRVVL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1483 413 Gene3D Ribonuclease Inhibitor 220 412 IPR032675 -
Ssu5g1483 413 SUPERFAMILY L domain-like 63 353 - -
Ssu5g1483 413 PANTHER SCOPOLETIN GLUCOSYLTRANSFERASE 9 409 - -
Ssu5g1483 413 Gene3D Ribonuclease Inhibitor 58 219 IPR032675 -
Ssu5g1483 413 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 9 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1483 Ssu-Chr5 47165274 47166515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1483 47 370 Leucine-rich Repeat extension Gene Families AT3G24480 46.605 5.29e-95 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1483 - - gmx:100813314 688.337