Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1482 ATGGGAACCAAGTCCATTTTCGTCTCCTTCTTACTGTGCTCTTTCTTGCTTCACCTCCATTCCCCCGAAGGGGTAGTGGCCCAAGAGGTAGCAAAATCAGAAAGCGAAGCAGTAGGAGAACCAGAACAGAGAGAAGCACTTGAAATTATCATCGGCGGTGGAGGCTCCCCTGCTCCTTCCCCTGAATGCCCCCCTCCCCCTCCAAAGCTGAATTCCCGGTTGGTGAGCGCACGCCGCGTGCTTCTCAGGTTCAAATCCCTCATCAACGACTCCACTTGTTACACGGCAAACTGGAACGAGAACTCCAGCCCGTGTACCTTCAACGGGATACGATGCGCCCAATACCCAAACTCAAGCGACCAAGCAGTTGCTGGAGTCGACTTAAACGGAGCAAGAGTCGCTGGTCGAAACGGTTGCGGCTTGCCCCTCACGGGTCTCGTGGACGACCTACCCGACTTGACATTCTTCCACGTCAACTCCAACAACTTCTCCGGCGGCGTCCCTTCCGGAATCACGAAGTTCCGTTATTTCTTCGAGCTGGACCTCAGTAACAACAAAATCGGTGGCCAGTTTCCCATGGACGCGATTAAGTCCAACCTGCTAGTGTTCCTGGACCTCAGGTTCAACGGCCTCACCGGGCCAATTCCCAGTGACCTCTTCCAGAGGGACCTCGACGTGATTTTCGTCAACAACAATAAGTTCAGTCAGTCTCTCCCTGAGAATTTCGGGTCCACACCGGCCCGGTACCTCACTTTCGCCAACAACCAACTCTCGGGCCAAATTCCGAGGAGCGTGGGCTTCGCGCCCAACCTCACCGAAGTGCTCTTCTTGGGCAACAAGTTCGACGGGTGCTTGCCGTACGAAATTGGGTACCTCAAAAAGGCCGTGGTGTTTGACGTGAGTAAAAACTTCTTGACCGGTCCAATTCCTTTGTCCTTTGGCTGCTTGAAGAGCATTCAGTACCTGAATTTGGCGCACAACAAATTCTACGGCGTTGTTCCGGACAACCTCTGTCAGATCGCTAGTCTGCGCAACAACGGGAACCTGTCTTTGGAGGATAATTACTTCAAAGAGATCGGACCCTCCTGCTGGAGTTTGATTAAGTCCAAGGTTTTGGATGTGTCAAGAAATTGCATCCCGGGGCTCCCAAATCAGAAGTCACCCCAAGAGTGCCACGAGTTTTACTATAAAACAAAGAAGCCGTGTCCGAATCCGAATTCATTTTATTACGTTCCTTGTAAGGCACACTGGGGGATGCAGAGCAGTGATCCTCAGGCAACGGGTCCACCTTCTGAGCCGGTGACGTACAAGACTCTCAAACCGCATCGGTTGAGATTGTGA 1341 0.5242 MGTKSIFVSFLLCSFLLHLHSPEGVVAQEVAKSESEAVGEPEQREALEIIIGGGGSPAPSPECPPPPPKLNSRLVSARRVLLRFKSLINDSTCYTANWNENSSPCTFNGIRCAQYPNSSDQAVAGVDLNGARVAGRNGCGLPLTGLVDDLPDLTFFHVNSNNFSGGVPSGITKFRYFFELDLSNNKIGGQFPMDAIKSNLLVFLDLRFNGLTGPIPSDLFQRDLDVIFVNNNKFSQSLPENFGSTPARYLTFANNQLSGQIPRSVGFAPNLTEVLFLGNKFDGCLPYEIGYLKKAVVFDVSKNFLTGPIPLSFGCLKSIQYLNLAHNKFYGVVPDNLCQIASLRNNGNLSLEDNYFKEIGPSCWSLIKSKVLDVSRNCIPGLPNQKSPQECHEFYYKTKKPCPNPNSFYYVPCKAHWGMQSSDPQATGPPSEPVTYKTLKPHRLRL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1482 446 Gene3D Ribonuclease Inhibitor 75 246 IPR032675 -
Ssu5g1482 446 Pfam Leucine rich repeat N-terminal domain 78 112 IPR013210 -
Ssu5g1482 446 Gene3D Ribonuclease Inhibitor 247 398 IPR032675 -
Ssu5g1482 446 PANTHER BNAC05G26270D PROTEIN 9 427 - -
Ssu5g1482 446 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 9 427 - -
Ssu5g1482 446 SUPERFAMILY L domain-like 75 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1482 Ssu-Chr5 47156302 47157642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1482 71 402 Leucine-rich Repeat extension Gene Families AT3G24480 40.719 8.53e-74 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1482 - - gmx:100796207 641.343