Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1480 ATGAGGAAGCCTAGTTGTGACATCAAAGAATTGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAGAAACTCATAGATTATATCAATAAACACGGCGAGGTTTGTTGGCGTACACTCCCTCAGGCTGCAGGTTTACTTCGGTGTGGTAAAAGTTGTAGGCTGAGATGGATAAACTATCTACGCCCAGACCTTAAAAGGGGTAACTTTGCTGAAGATGAAGAAGATCTCATAATCAAGCTTCATGCGCTGCTAGGCAACCGGTGGTCACTAATAGCTGGGAGATTACCAGGACGTACAGATAATGAAGTGAAGAATTATTGGAATTCTCATATAAGAAGAAAGCTCATTAAGAAAGGCATTGACCCAAATAATCATCGATTAAACCTTAAAATCCCTTCCCTTCCGAGTCCACCTGTGTCTGATGATAGCTCAAAACCCTTTGGCGTGAAAGACATTTCCAAGAACGGGACGAGCAAATCACCTCGTGTTTACAATTCTGGTGAAGTCTCAGATGCCGCAAGTGGCGAGGCTGAGTCATCATGTGCCCTTCCAGATTTAAACCTTGATCTCTCTGTGGCCATTCCTTCAGCTTCACCTGAAAACAATCTAACACCATTTCATGAATCTAATTCGTCAAGGAAACTGTATTTTGATTCCCCTTCAACACTTCTTCTGTTTCAGTAA 684 0.424 MRKPSCDIKELNKGAWSKQEDQKLIDYINKHGEVCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKKGIDPNNHRLNLKIPSLPSPPVSDDSSKPFGVKDISKNGTSKSPRVYNSGEVSDAASGEAESSCALPDLNLDLSVAIPSASPENNLTPFHESNSSRKLYFDSPSTLLLFQ 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1480 227 MobiDBLite consensus disorder prediction 150 167 - -
Ssu5g1480 227 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Ssu5g1480 227 MobiDBLite consensus disorder prediction 128 171 - -
Ssu5g1480 227 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Ssu5g1480 227 Gene3D - 68 130 - -
Ssu5g1480 227 CDD SANT 68 111 IPR001005 -
Ssu5g1480 227 Gene3D - 5 65 - -
Ssu5g1480 227 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 198 - -
Ssu5g1480 227 CDD SANT 15 60 IPR001005 -
Ssu5g1480 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Ssu5g1480 227 SMART sant 12 62 IPR001005 -
Ssu5g1480 227 SMART sant 65 113 IPR001005 -
Ssu5g1480 227 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Ssu5g1480 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Ssu5g1480 227 PANTHER - 2 198 - -
Ssu5g1480 227 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Ssu5g1480 227 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1480 Ssu-Chr5 47056318 47057491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1480 2 195 MYB Transcription Factor Family AT4G38620 54.245 3.54e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu5g1480 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1480 K09422 - gmx:100818783 385.571