Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1479 ATGGCCGGCGAACTGGCCGGAGACCACACGCTGGAGATCCTGTGTCTGGTCCACGATATTGCCGGAATGTGCGCGGGCTCCTCCTCCGGCGCCGCCATTGCCGCCGACGCCGTGTTCCGGAAGGACTGCACCGATCTGGTTCGCCGGATCTCCCTCCTCACCCACCTGTTCGAGGAGATTAGGGAACTCAACAACAACGTTTTCGATTccgcttcttcttcttcttcttccacttCTGCTTCCGTGTCTTCCTGGTCCTCTGATCTCGTCCTCGCTCTTCACTCCGCTCGACGCTTGCTTTCGGTCGCTAGAAACTTCCGCTCCAATTGCTCCTCTGATGGAGCTGCCAAGACCATTGTCTTCCAATTTCAGTGTGTGACGTGGAAATTGGAGAAACTGTTGAGCAATTTGCCGTATGATAATTTAGACATCTCGGAGGAAGTCAAAGAACAGGTGGATTTGGTGAGAACACAATTGAGACGAGCCACGGAAAAATATGGGTATATGATTTCAAAGATGCCATCTTATGAATTATCCCAGCCGCTGGCTGAAGAAATTAGTCAGGTTCTTGGCAAATCTGTGAATGGGTTGTACAAACAACACAGCTGTCCTGGAAATTTATCAGAACTAGACAGCATTTCTGAAAACAATGAAGAGAAAAGTTGCAGCACAAATCGGGCCGGATCTCACTTGGAAAGAGCAAGGAGCATCCCTGCTTCTTCTACAGTTTCATTACCCGATGCAACTGATCGTGAAAGTCAAGAAATTTCTGAGACAAAGAGTCTATCTGAGGTTAAAAAGCCTGAAGCAAGTGTGATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTGGCGACTGGTCAGACATATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATACAACATGTCCGAAAACTCAGCAGAAGCTCCAACATTTGACCCTGACCCCAAATTATGTTTTAAGGAGCCTTATTTCTCAGTGGTGTATAGAGCACAACATTGAGCAGCCAACAGGACTAACTAATGGGAAACTAAAGAAGAGTGATGGATCGTTCAGAGATGTTACAGGTGACATTGCAGCAATCGAAGCTCTGGTCTGGAAGCTCTCCAGCCGGTCTGTTGAGGAGCGTAGAGCAGCTGTTACTGAAATCCGATCACTATCCAAACGAAGTACTGACAATAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTTCTAGTCAACCTTCTAACATCAGAAGATGTATTGACGCAAGACAATGCAGTTACTTCAATTCTCAACCTTTCCATATATGAAAACAACAAGGGACTTATAATGCTTGCTGGTGCCATTCCATCCATTGTCCAAGTCCTCCGAGCTGGAACCATGGAAGCGAGAGAAAATGCAGCAGCAACCCTTTTCAGCTTGTCACTTGCAGAcgagaacaaaataataattggtgCCTCAGGAGCTATACCCGCTTTGGTAGAATTGCTCCAGAATGGGAGTCCTAGAGGAAAGAAGGATGCTGCAACAGCATTgttcaatttatgcatttatcAAGGGAACAAGGGCAGGGCCATTAGGGCAGGGATCATCACAGCATTGTTGAAGATGCTTACAGATTCAAGCAAATCAATGGTTGACGAGGCCCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAAGTTGCTATAGTACAAGCCAGCACTATACCAGTTTTGATAGATCTTTTGAGGACAGGATTACCTCGCAATAAAGAGAATGCAGCTGCTATTCTACTTGCCTTGTGCAAGAGGGATGCCGACAATCTTTCTTGTATAAGTAGACTTGGTGCTGTCATACCTCTCACTGAACTTGCTCGAAATGGTACAGAGAGGGCCAAACGGAAGGCTACTTCATTATTGGAGCATCTTCGTAAGTTGCAGCAACTTTGA 1959 0.4456 MAGELAGDHTLEILCLVHDIAGMCAGSSSGAAIAADAVFRKDCTDLVRRISLLTHLFEEIRELNNNVFDSASSSSSSTSASVSSWSSDLVLALHSARRLLSVARNFRSNCSSDGAAKTIVFQFQCVTWKLEKLLSNLPYDNLDISEEVKEQVDLVRTQLRRATEKYGYMISKMPSYELSQPLAEEISQVLGKSVNGLYKQHSCPGNLSELDSISENNEEKSCSTNRAGSHLERARSIPASSTVSLPDATDRESQEISETKSLSEVKKPEASVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIEHNIEQPTGLTNGKLKKSDGSFRDVTGDIAAIEALVWKLSSRSVEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVQASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLSCISRLGAVIPLTELARNGTERAKRKATSLLEHLRKLQQL 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1479 652 Coils Coil 632 652 - -
Ssu5g1479 652 Gene3D - 354 448 IPR011989 -
Ssu5g1479 652 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Ssu5g1479 652 SMART arm_5 566 606 IPR000225 GO:0005515
Ssu5g1479 652 SMART arm_5 608 648 IPR000225 GO:0005515
Ssu5g1479 652 SMART arm_5 402 442 IPR000225 GO:0005515
Ssu5g1479 652 SMART arm_5 525 565 IPR000225 GO:0005515
Ssu5g1479 652 SMART arm_5 484 524 IPR000225 GO:0005515
Ssu5g1479 652 SMART arm_5 443 483 IPR000225 GO:0005515
Ssu5g1479 652 PANTHER U BOX DOMAIN-CONTAINING 16 649 - -
Ssu5g1479 652 SUPERFAMILY RING/U-box 272 347 - -
Ssu5g1479 652 Gene3D - 550 651 IPR011989 -
Ssu5g1479 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 454 496 IPR000225 GO:0005515
Ssu5g1479 652 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Ssu5g1479 652 MobiDBLite consensus disorder prediction 218 263 - -
Ssu5g1479 652 Pfam U-box domain 273 344 IPR003613 GO:0004842|GO:0016567
Ssu5g1479 652 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 16 649 - -
Ssu5g1479 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 495 537 IPR000225 GO:0005515
Ssu5g1479 652 Pfam Armadillo/beta-catenin-like repeat 485 523 IPR000225 GO:0005515
Ssu5g1479 652 Pfam Armadillo/beta-catenin-like repeat 403 441 IPR000225 GO:0005515
Ssu5g1479 652 MobiDBLite consensus disorder prediction 218 250 - -
Ssu5g1479 652 SUPERFAMILY ARM repeat 372 646 IPR016024 -
Ssu5g1479 652 Coils Coil 145 165 - -
Ssu5g1479 652 CDD RING-Ubox_PUB 277 319 IPR045210 -
Ssu5g1479 652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 346 IPR013083 -
Ssu5g1479 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
Ssu5g1479 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 413 455 IPR000225 GO:0005515
Ssu5g1479 652 Gene3D - 449 549 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1479 Ssu-Chr5 47020755 47023770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1479 37 651 U-box Gene Family AT1G23030 64.182 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1479 - - gmx:100811123 1090.87