Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1475 ATGGAGGCTCACAGAGAAGGGTCGTCTTATTATAACGTTCTCGGTGTTAGTTCCGATTCTAACGTGGAAGAGATAAGGCGCGCTTACAGGAAGCTCGCTATGCAGTGGCATCCGGATAGGTGGACAAGGACTCCTTCTTTATTGGGTGAAGCTAAACGCAGATTCCAGCAAATTCAAGAAGCCTATTCAGTGTTGTCGGATCGTAAGAAGAGAACTATGTACGATGCGGGCTTGTTTGATCCTCTAGAGGAGGCGGATGAGGGCTTTTCTGATTTTGTGGAAGAAATGCTGTCCCTTATGGCTCAAGTGAGGAGAGAGAAAAAGCATTACGGTTTAGAAGAGTTGCAGGCCATGTTAATGGAAATGGCTGAAGGATTCGATTCTCCTTCAATGTACTGTGGGATTCCCTCTCTGATAGATGAATCTCGGGGCGTAAAGAGAATGCGTTTTGACGACACCATGATGGAGAATAGGGGGTAG 480 0.4646 MEAHREGSSYYNVLGVSSDSNVEEIRRAYRKLAMQWHPDRWTRTPSLLGEAKRRFQQIQEAYSVLSDRKKRTMYDAGLFDPLEEADEGFSDFVEEMLSLMAQVRREKKHYGLEELQAMLMEMAEGFDSPSMYCGIPSLIDESRGVKRMRFDDTMMENRG 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1475 159 ProSiteProfiles dnaJ domain profile. 9 78 IPR001623 -
Ssu5g1475 159 SMART dnaj_3 8 70 IPR001623 -
Ssu5g1475 159 ProSitePatterns Nt-dnaJ domain signature. 55 74 IPR018253 -
Ssu5g1475 159 Gene3D DnaJ domain 1 98 IPR036869 -
Ssu5g1475 159 PRINTS DnaJ domain signature 29 44 IPR001623 -
Ssu5g1475 159 PRINTS DnaJ domain signature 50 70 IPR001623 -
Ssu5g1475 159 PRINTS DnaJ domain signature 11 29 IPR001623 -
Ssu5g1475 159 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 156 - -
Ssu5g1475 159 Pfam DnaJ domain 10 75 IPR001623 -
Ssu5g1475 159 PANTHER PUTATIVE, EXPRESSED-RELATED 2 156 - -
Ssu5g1475 159 CDD DnaJ 10 67 IPR001623 -
Ssu5g1475 159 SUPERFAMILY Chaperone J-domain 8 81 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1475 Ssu-Chr5 46936825 46938662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1475 6 76 C2H2 Transcription Factor Family AT1G74250 45.833 1.17e-13 65.5