Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1468 ATGGAAGAATGCGAAGGAAAGTTGCATAGCGATTGTAGCTTTTGCGGTTCTCCTGAGGTAGTTCAAGTTATACAAAAGGTAATTGCAGAGGTGATAGGGACGTATTTCTTAGTATTCGCAGGGTGTTGCGCTGTGGTTCTTAATAATGTGGAAGAGACTAAAGGGACAATAACGTTTCCTGGAATTTGCGTGGTGTGGGGTTTCACAGTAACGATCTTGGTTTATTCTCTCGGTCACGTCTCTGGTGCTCATTTCAATCCAGCAGTCACTGTGCCTCTGTATTTTATTGCGCAAGTACTTGGATCTTTCCTTGCTAGTGGGACATTGTACCTTCTCTTTGATGTAGATGATAAATCTTTTTTTGGAACAAGACCAGCAGGACCTCATATTCAATCTCTTGTTTTTGAGTTACTCACATCATTTCTCTTAATGTTTGTTGTCTCTGCAGTTTCCACGGACAATAGAGCGATTGGAAAATTGGCAGGTATTGCTGTTGGTATGACAATCATAGTAGACGTCTTCATTGCTGGACCTGTGTCAGGAGCCTCTATGAACCCAGCCAGAAGCCTTGGACCTGCCGTGGTGATGCACGTTTACAACGGATTTTGGATTTATATAGTTGGACCATTTGTTGGTACCATAGTGGGTGCCTCAACCTACAACTTGATTAGATTtactgacaaaccactaagagAAATTGGCTcaagctcaaatttatttaaaactgcGTCCAGATCAAATTTTCGATAG 750 0.3973 MEECEGKLHSDCSFCGSPEVVQVIQKVIAEVIGTYFLVFAGCCAVVLNNVEETKGTITFPGICVVWGFTVTILVYSLGHVSGAHFNPAVTVPLYFIAQVLGSFLASGTLYLLFDVDDKSFFGTRPAGPHIQSLVFELLTSFLLMFVVSAVSTDNRAIGKLAGIAVGMTIIVDVFIAGPVSGASMNPARSLGPAVVMHVYNGFWIYIVGPFVGTIVGASTYNLIRFTDKPLREIGSSSNLFKTASRSNFR 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1468 249 Pfam Major intrinsic protein 21 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g1468 249 PANTHER AQUAPORIN NIP2-1 11 244 IPR034294 -
Ssu5g1468 249 Gene3D Glycerol uptake facilitator protein. 6 235 IPR023271 -
Ssu5g1468 249 PRINTS Major intrinsic protein family signature 166 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g1468 249 PRINTS Major intrinsic protein family signature 135 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g1468 249 PRINTS Major intrinsic protein family signature 203 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g1468 249 PRINTS Major intrinsic protein family signature 25 44 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g1468 249 PRINTS Major intrinsic protein family signature 66 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g1468 249 PANTHER AQUAPORIN NIP4-1 11 244 - -
Ssu5g1468 249 SUPERFAMILY Aquaporin-like 22 232 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1468 Ssu-Chr5 46835825 46839245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1468 2 247 Major Intrinsic Protein MIP AT5G37810 57.529 1.28e-99 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1468 K09874 - gmx:100819179 402.519