Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1466 ATGGCGGTTTTACCTAGTAGCTCCTCCAGCTTGGAATTAACCATATCTGTCCCAGGCTTTGCTTCTTCACCAACTCTTCTTCCCTCATCATCTGTGAAAGAATTGGACATGAACCAAGTGCCTCTAGAAGAAGATTGGATGGCATCAAACATGGAAGACGAAGATGAAAGCAGCAATGGAGACCCTCCCCGCAAGAAACTCCGTCTCACAAAGGAACAGTCTCGTCTCCTTGAAGAAAGCTTTAGACAAAACCACACTTTAAACCCAAAGCAGAAAGAGTCTTTGGCAATGCAACTGAAGCTGCGACCAAGGCAAGTAGAGGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACGGAGATGGAGTGCGAGTATCTGAAGAGGTGGTTTGGGTCACTGACAGAGCAGAACCGAAGGCTTCAGAGGGAAGTGGAGGAACTGAGGGCTATGAAGGTGGGTCCACCCACTGTTATTTCCCCTCACTCTTGCGAGCCACTCCCAGCGTCCACACTAACCATGTGCCCCCGCTGTGAGCGTGTCACCAGCACCGCCGACAAAGCGTCCTCCGCCGCCGCCACTTTGTCCGCTAAAGTACCCGCGCCTGCCCTCCAATCCCGTCAACCTTCTGCGGCTTGTTGA 648 0.5247 MAVLPSSSSSLELTISVPGFASSPTLLPSSSVKELDMNQVPLEEDWMASNMEDEDESSNGDPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLTMCPRCERVTSTADKASSAAATLSAKVPAPALQSRQPSAAC 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1466 215 CDD homeodomain 63 121 IPR001356 GO:0003677
Ssu5g1466 215 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 195 - -
Ssu5g1466 215 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Ssu5g1466 215 SMART HOX_1 62 124 IPR001356 GO:0003677
Ssu5g1466 215 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355|GO:0043565
Ssu5g1466 215 MobiDBLite consensus disorder prediction 191 215 - -
Ssu5g1466 215 SMART halz 120 163 IPR003106 GO:0006355|GO:0043565
Ssu5g1466 215 Gene3D - 56 126 - -
Ssu5g1466 215 Pfam Homeodomain 64 118 IPR001356 GO:0003677
Ssu5g1466 215 MobiDBLite consensus disorder prediction 1 36 - -
Ssu5g1466 215 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Ssu5g1466 215 SUPERFAMILY Homeodomain-like 49 121 IPR009057 -
Ssu5g1466 215 PANTHER - 1 195 - -
Ssu5g1466 215 MobiDBLite consensus disorder prediction 1 66 - -
Ssu5g1466 215 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1466 Ssu-Chr5 46731653 46735477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1466 32 194 Homeobox Transcription Factor Family AT1G70920 64.286 1.29e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu5g1466 Homeodomain 3.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1466 K09338 - gmx:100775341 386.726