Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1463 ATGGCGTCAACGATCCGCATCTCCTTCACCCTCAAAACCCTTCTATTCGTCTGCTACTGTTTCTTTCATTTCCTCCTCTCAACTTCCTCAGAACCAACCCATTCATTCCCCAAAGAAGCCCTCCCCACTAAGTACGGTTACCTTCCAGTCAGTCCCACTTCCACTTCTGCCATTTTCTACGCTTTCTATGAAGCCCAGAACTCCACTTTACCCCTCTCCCAAACCCCACTTCTCATTTGGCTCCAAGGTGGCCCTGGCTGCTCCTCCATGCTTGGCAACTTGTACGAACTTGGACCCTGGCTCGTCACCGAATCTCTCACCCTTCAACCCAACCCTGGTGCTTGGAATAGAATTTTTGGACTCCTTTTTCTTGATAGTCCCATTGGATCTGGCTTCAGCGTGGCCTCAACCCCAGAAGAAATCCCAAAAGATCAAAACGCCGTGGCCGAGCATCTTTTTGCTGCTGTAACCAAATTTATTCAACTTGATCCTGTTTTCAAGCATCGCCCTATTTATATTACTGGAGAAAGCTATGCTGGGAAGTATGTGCCTGCTATTGGGTACTACATATTGGAGAAAAATGCAGAGTTGGAGGTTTCTGAAAGAGTGAATTTGGCTGGTGTGGCTATTGGGGATGGGTTAACTGACCCTGAAACTCAAGTGGCCACTCACGCTGTGAATGCTTATTATGTTGGATTGATCAATGAGAGGCAAAAAAATGAGTTGGAGAAGGCTCAAGTTGAAGCAGTTCGGTTGACCCAAATGGGGAATTGGAGTGAAGCAACGGATGTGAGAGACAAAGTCTTGACAGTGTTGCGAGACATGACAGGGTTGGCTACTTTGTATGACTATACAAGGAAAGTTCCTTATCAGGATGATTTGGTTGAACGATTCTTGAACATTGCTGAGGTGAAGAAGGCCTTGGGGGTCAATGGATCGTTTGTGTATCAGTTATGTAGTGATGTTGTTGGGGCTGTATTGCATGCCGATGTGATGAAAAGTGTGAAATATATGGTGGAATACTTGGTGAGAAGGAGCAGGGTGTTGTTATATCAAGGTCAGTATGATTTGAGGGATGGCGTGGTTCAAACAGAGGTTTGGGTGAAGACAATGAAATGGGAAGGGATTGTGGAGTTTCTGAATGCTGAAAGGAAGATATGGAAGGTGAATGGAGAGCTTGCAGGGTACGTACAAAGTTGGAAGTCTCTCACCAATGTTGTGGTTTTGGGAGCTGGGCATCTTTTGCCTACTGACCAGCCTGTTAATTCTCAAGCAATGATAGAAGATTGGGTTTTGGAAAGGGGTTTGTTTAAAAATGTGCAGCTGGAAAATGTATCAAAAGAGTCTACATTTGTCGTGTAA 1362 0.4523 MASTIRISFTLKTLLFVCYCFFHFLLSTSSEPTHSFPKEALPTKYGYLPVSPTSTSAIFYAFYEAQNSTLPLSQTPLLIWLQGGPGCSSMLGNLYELGPWLVTESLTLQPNPGAWNRIFGLLFLDSPIGSGFSVASTPEEIPKDQNAVAEHLFAAVTKFIQLDPVFKHRPIYITGESYAGKYVPAIGYYILEKNAELEVSERVNLAGVAIGDGLTDPETQVATHAVNAYYVGLINERQKNELEKAQVEAVRLTQMGNWSEATDVRDKVLTVLRDMTGLATLYDYTRKVPYQDDLVERFLNIAEVKKALGVNGSFVYQLCSDVVGAVLHADVMKSVKYMVEYLVRRSRVLLYQGQYDLRDGVVQTEVWVKTMKWEGIVEFLNAERKIWKVNGELAGYVQSWKSLTNVVVLGAGHLLPTDQPVNSQAMIEDWVLERGLFKNVQLENVSKESTFVV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1463 453 ProSitePatterns Serine carboxypeptidases, serine active site. 173 180 IPR018202 GO:0004185
Ssu5g1463 453 Pfam Serine carboxypeptidase 41 431 IPR001563 GO:0004185|GO:0006508
Ssu5g1463 453 PANTHER CARBOXYPEPTIDASE 25 439 - -
Ssu5g1463 453 Coils Coil 235 255 - -
Ssu5g1463 453 Gene3D alpha/beta hydrolase 27 442 IPR029058 -
Ssu5g1463 453 SUPERFAMILY alpha/beta-Hydrolases 43 431 IPR029058 -
Ssu5g1463 453 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 184 IPR001563 GO:0004185|GO:0006508
Ssu5g1463 453 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Ssu5g1463 453 PRINTS Carboxypeptidase C serine protease (S10) family signature 403 416 IPR001563 GO:0004185|GO:0006508
Ssu5g1463 453 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Ssu5g1463 453 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 25 439 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1463 Ssu-Chr5 46651657 46653018 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1463 294 431 Calmodulin-binding Proteins AT2G22960 20.863 1.14e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1463 K09645 - gmx:100780822 791.956