Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1461 ATGGATTCACCCCACGCATCTCTCTTCATCAAGACACCAATCTTCTTCTGCTTCTGCTTCTTTCTAAGCACTCTTTCAGTCTCATCTTCACCATCTGCCTCAAAATCAACCCATGCATTTCCCAAAGAAGCTCTCCCCACCAAGTATGGTTACCTCCCAGTCAGCCCCCCTTCCACTTCTGCCATGTTCTACGCTTTCTATGAAGCCCAGAATTCCACTTTACCTCTCTCCCAAACCCCACTTCTCATTTGGCTCCAAGGCGGTCCTGGCTGCTCCTCCATGATTGGTAACTTGTATGAACTTGGACCCTGGCGTGTCACTGGATCGCTCACCCTTCAACCCAACCCTGGTGCTTGGAATAGAATTTTTGGCCTTCTTTTCCTTGATAATCCCATCGGAACTGGCTTCAGTGTGGCGACAAGTCCAGAAGAAATCCCGAAAGATCAAAACGTCGTTGCCAAACACCTTTTTGCTGCTATAACCGGGTTTGTTCAACTTGATCCTCTTTTCAAGCATAGGCCTATTTATATCACTGGGGAAAGCTATGCTGGGAAGTATGTGCCTGCTATTGGGTATtacattttgaagaaaaatgcaGCGTTGCAGGTTTCTGAAAGAGTGAATTTGGCTGGTGTGGCTATTGGGGATGGGTTAACTGACCCTGAAACTCAAGTAGCTACTCATGCTTTGAATGCTTATTATGTTGGATTGATCAATGAGAGGCAAAAGAATGAGTTGGAGAAAGCTCAATTGGAAGCAGTAAGATTAGCCCAGATGGGGAATTGGAGTGTAGCAACGGATGCCAGAATCAAAGTCTTGAGAATGTTGCAAAACATGACAGGGTTGGCTACTTTGTATGACTATACAAAGAAAGTTCCTTATCAGGATGATTTGGTTGAAAAATTCTTGAACATTGCTGAGGTGAAGAAGGCTTTGGGGGTCAATGAATCGTTTGTGTATGAGTTATGTAGTGATGTTGTTGGGGATGTATTACACGCTGATGTGATGAAAAGTGTGAAATATATGGTGGAGCACTTGGTGAGGAGCAGTAAGGTGTTGTTATATCAAGGTCAGCATGATTTGAGGGATGGTGTGGTACAAACAGAGGTTTGGGTGAAGACAATGAAATGGGAAGGAATTGTGAAGTTTCTGAATGCTGAAAGGAAGATATGGAAGGTTAATGGAGAGCTTGCTGGATATGTACAAAATTGGAAGTCTCTCACCAATGTTGTGGTTTTGGGAGCTGGGCATCTTTTGCCTGCTGACCAGGCTGTTAATTCTCAAGTAATGATAGAAGACTGGGTTTTGGAAAGGGGTTTGCTTAAAAATGTGCAGAATGAAAATGTATCGTAA 1353 0.4324 MDSPHASLFIKTPIFFCFCFFLSTLSVSSSPSASKSTHAFPKEALPTKYGYLPVSPPSTSAMFYAFYEAQNSTLPLSQTPLLIWLQGGPGCSSMIGNLYELGPWRVTGSLTLQPNPGAWNRIFGLLFLDNPIGTGFSVATSPEEIPKDQNVVAKHLFAAITGFVQLDPLFKHRPIYITGESYAGKYVPAIGYYILKKNAALQVSERVNLAGVAIGDGLTDPETQVATHALNAYYVGLINERQKNELEKAQLEAVRLAQMGNWSVATDARIKVLRMLQNMTGLATLYDYTKKVPYQDDLVEKFLNIAEVKKALGVNESFVYELCSDVVGDVLHADVMKSVKYMVEHLVRSSKVLLYQGQHDLRDGVVQTEVWVKTMKWEGIVKFLNAERKIWKVNGELAGYVQNWKSLTNVVVLGAGHLLPADQAVNSQVMIEDWVLERGLLKNVQNENVS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1461 450 Gene3D alpha/beta hydrolase 25 448 IPR029058 -
Ssu5g1461 450 PANTHER CARBOXYPEPTIDASE 27 441 - -
Ssu5g1461 450 SUPERFAMILY alpha/beta-Hydrolases 47 435 IPR029058 -
Ssu5g1461 450 Coils Coil 239 259 - -
Ssu5g1461 450 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 27 441 IPR001563 GO:0004185|GO:0006508
Ssu5g1461 450 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185
Ssu5g1461 450 PRINTS Carboxypeptidase C serine protease (S10) family signature 407 420 IPR001563 GO:0004185|GO:0006508
Ssu5g1461 450 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185|GO:0006508
Ssu5g1461 450 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185|GO:0006508
Ssu5g1461 450 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185|GO:0006508
Ssu5g1461 450 Pfam Serine carboxypeptidase 46 435 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1461 Ssu-Chr5 46633807 46635159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1461 298 435 Calmodulin-binding Proteins AT2G22960 20.863 8.05e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1461 K09645 - gmx:100777309 744.962