Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1460 ATGGAGTCCGCGCTCCACAAGTCCCCCATCATCAAAATCCACGTCTTCTTCTGCTTCTGCTTCTTTCTATGTCCTCTCTTAGTCTCAGCTTCTTCACCATCTGCTTCAAAATCAACCCATTCATTCCCCAAAGAAGCCCTCCCCACGAAGCACGGTTACCTTCCAGTCAACCCCTCGTCCACTTCTGCCATTTTCTACGCTTTCTATGAAGCCCAGAACTCCACTTTACCTCTCTCCcaaaccccacttctcatctGGCTCCAAGGTGGCCCTGGCTGCTCCTCCATGATTGGTAACTTGTATGAGCTTGGACCCTGGCGTGTCACTGGATCGCTCACCCTTCAACCCAACCCTGGTGCTTGGAATAGAATTTTTGGCCTTCTTTTCCTTGATAATCCCATCGGAACTGGCTTCAGTGTGGCGACAAGTCCAGAAGAAATCCCGAAAGATCAAAACGTCGTTGCCAAACACCTGTTTGCTGCTATAACCAGGTTTGTTCAACTTGATCCTCTTTTCAAGCATAGGCCTATTTATATCACTGGGGAAAGCTATGCTGGGAAGTATGTGCCTGCTATTGGGTATtacattttgaagaaaaatgcaGCGTTGCAGGTTTCTGAAAGAGTGAATTTGGCTGGTGTGGCTATTGGGGATGGGTTAACTGACCCTGAAACTCAAGTAGCTACTCATGCTTTGAATGCTTATTATGTTGGATTGATCAATGAGAGGCAAAAGAATGAGTTGGAAAAAGCTCAATTGGAAGCAGTAAGATTAGCCCAGATGGGGAATTGGAGTGAAGCAACGGATGCCAGAATCAAAGTCTTGAGAATGTTGCAAAACATGACAGGGTTGGCTACTTTGTATGACTATACAAAGAAAGTTCCTTATCAGGATGATTTGGTTGAAAAATTCTTGAACATTGCTGAGGTGAAGAAGGCTTTGGGGGTCAATGAATCGTTTGTGTATGAGTTATGTAGTGATGTTGTTGGGGATGTATTACACGCTGATGTGATGAAAAGTGTGAAATATATGGTGGAGCACTTGGTGAGGAGCAGTAAGGTGTTGTTATATCAAGGTCAGCATGATTTGAGGGATGGTGTGGTACAAACAGAGGCTTGGGTGAAGACAATGAAATGGGAAGGAATTGTGAAGTTTCTGAATGCTGAAAGGAAGATATGGAAGGTTAATGGAGGGCTTGCCGGGTATGTACAAAACTGGAAGTCTCTCACCAATGTTGTGGTTTTGGGGGCGGGGCATCTTTTGCCTGCTGATCAGGCTGTTAATTCACAAGCAATGATAGAAGACTGGGTTTTGGAAAGGGGTTTGTTTAAAAGTGCGTAG 1341 0.4377 MESALHKSPIIKIHVFFCFCFFLCPLLVSASSPSASKSTHSFPKEALPTKHGYLPVNPSSTSAIFYAFYEAQNSTLPLSQTPLLIWLQGGPGCSSMIGNLYELGPWRVTGSLTLQPNPGAWNRIFGLLFLDNPIGTGFSVATSPEEIPKDQNVVAKHLFAAITRFVQLDPLFKHRPIYITGESYAGKYVPAIGYYILKKNAALQVSERVNLAGVAIGDGLTDPETQVATHALNAYYVGLINERQKNELEKAQLEAVRLAQMGNWSEATDARIKVLRMLQNMTGLATLYDYTKKVPYQDDLVEKFLNIAEVKKALGVNESFVYELCSDVVGDVLHADVMKSVKYMVEHLVRSSKVLLYQGQHDLRDGVVQTEAWVKTMKWEGIVKFLNAERKIWKVNGGLAGYVQNWKSLTNVVVLGAGHLLPADQAVNSQAMIEDWVLERGLFKSA 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1460 446 ProSitePatterns Serine carboxypeptidases, serine active site. 179 186 IPR018202 GO:0004185
Ssu5g1460 446 PANTHER CARBOXYPEPTIDASE 29 440 - -
Ssu5g1460 446 Coils Coil 241 261 - -
Ssu5g1460 446 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Ssu5g1460 446 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Ssu5g1460 446 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Ssu5g1460 446 PRINTS Carboxypeptidase C serine protease (S10) family signature 409 422 IPR001563 GO:0004185|GO:0006508
Ssu5g1460 446 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 29 440 IPR001563 GO:0004185|GO:0006508
Ssu5g1460 446 Pfam Serine carboxypeptidase 48 437 IPR001563 GO:0004185|GO:0006508
Ssu5g1460 446 Gene3D alpha/beta hydrolase 29 443 IPR029058 -
Ssu5g1460 446 SUPERFAMILY alpha/beta-Hydrolases 49 437 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1460 Ssu-Chr5 46623235 46624575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1460 300 437 Calmodulin-binding Proteins AT2G22960 21.583 2.47e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1460 K09645 - gmx:102663282 756.518