Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1458 atggatgATGAAGTTGTTCAGCGAGTGTTCCATGAAGGAGGACGCGATTACTTCCAGCAACAGCCTTCAACTTCTTCGTCTTCCTCTTCCATCCTCCAATCTCTACCTCTCCATGTGTCTTTTGATCATGGATATTATTTGTTGGTAAAATCTATCCAAGAACTCCGAGAGAAAAAGGATGGCCTTGTTACTGTTGGCATTGGTGGTCCAAGTGGATCTGGTAAAACAAGCTTAGCAGAAAAGGTGGCATCTGTTATTGGTTGTACTGTTATATCAATGGAGAACTATCGTGATGGAGTTGATGAGGGGAATGATCTGGATTCTATAGATTTTGATACCCTGATCAAGAATCTTGAGGATTTGACTGAAGGCAATGATACACTAATCCCAGAGTTTGACTATCAGCAAAAGAGGCGTGTTGgctataaaacaataaagaatgCTTCATCTGGGGTGGTAATAGTTGATGGCACATATGCATTGCATGCAAAACTGCGGTCTTTACTGGATATTCGAGTTGctgtgGTTGGTGGTGTTCATTTTAGCCTGCTTTCTAAAGTTCGCTATGACATTGGAGATTCTTGCTCACTGGATTACCTTATAGATAGCATTTTTCCATTATTTAGGAAACACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAATAACAGCTTTGTCTCATCATTCAGAGAGGCAATCTACAAAGTTAAATGCAGAAGCGAGTCTTCAGATGGACATTCAAGTTCTGCTTTTCAAGGAAACGAAGCCCAAACAGATAATTTTATCGAAATGTACCTTAGACCACCTTCAGCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGgaattagatattatttatcactTGGTGACCAGAGGATTGTTGACAAGAATTTCATTATCAGGCCTAAAGCTGAATTTGAGGTTGGTCGAATGACATTGGGTGGATTATTGGCTCTTGGGTACACTGTTGTGGTTAGTTATAAACGTGCATCCACAACTGTCAATAATGGCAAGGTTTCAATGTCTTTTGAAACGATTGATGTTCTTGGTGAGACATTCATGGTGATGAGAggaactaatagaaagACTGTTGGAACAGAAGCATTAAGGATGGGTATCAATGGACCATGGATTACTAAATCATATCTGGAAATGATTCTTGAGAGAAAAGGTGTTCCTCGTCTTAGTACACCACCACTTGTGTCTACTACAACTGTGGCTGGTAGTCAAGAAACAGTAATCATTGCACCAAAGCCAATTCGTGTTACTCCTAACCTTGTGACTGGGCTTGAGGATTTATCTCAGCCATGGACGCGATCCCCAACAAAATCTAAAATGGAACCTGTTGTGGCTACATGGCATTTCATATCTTCAGATTCCTCCCAGCCTGACAACTCAGTCCTAGATCCTTCATCTTTCAGGGATAGTATTAGGCTTGCTCCAATGCCTGATTCATATGACTTGGATAGGGGATTGCTTTTGGCAGTTCAAGCGATACAAGCATTGTTGGAGAATAAAGGTGTCCCAGTCATAGTTGGAATTGGAGGTCCAAGTGGGTCTGGAAAGACTAGTTTGGCTCATAAAATGGCAAATATAATTGGTTGTGAAGTAGTTTCCCTGGAAAGCTATTATAAGCAAATAAAGGATTTTAAATACGATGACTTCAGTGCACTTGATTTATCTTTGCTATCAAAGAATATTGATGACATAAGAAATGGTCAAAGAACAAAAGTACCTATATTTGACTTGGAAAGTGGTGCTCGGAGTGGTTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGCGTCTATGCTTTGCATCCTGATATTCGAATATCACTTGACTTGTGGATTGCTATTGTTGGAGGTGTTCATTCACATTTGATTTCACGAGTTCAAAGGGATAAGAGTCGAGTGGGATGCTTTATTTCCCAAAATGAGATCATGATGACAGTGTTTCCTATGTTCCAGCAGCTTATTGAACCTCATCTTGTTCATGCACATCTTAAAATTCGAAATGACTTTGACCCTGTGCTTTCTCCTGAGAGttcattatttgtattaaagAGTAACAAAAAAGTAGCATATCAAGATATTGTTGCAATTCTTGATTCAGCAAAATTTTGCAGTTCGGTGCagaaatttattgatatttatataaggCTTCCTGGGACCCCTTCTAATGGGCGGTTGAGAGATAGTGATTGTATTCGAGTCAGAATATGTGAAGGCAGATTTGCGTTGCTGATACGAGAGCCTATCAAAGAAGGGAACTTTATCATTCAGCCTAAAGTGGATTTTGATATTAGCATTAGTACAGTTGCTGGTCTTCTTAATCTTGGGTATCAAGCAGTTGCTTATATTGAAGCGTCTGCATTCATCTATCAGGATGGAAAGATTCTAATTGAGGTTGACCATCTACAAGATATCCCTGGCCCATACATTCAGATAAAGGGTGTTAATAAAGATGCAGTGGCATCAGCAGGTTCAATGCTTAAATTGGATGGTTCATATACTACTAAGAGTTATCTAGAGATAATTTTGGCAAGACTACCAGCAATAGAAAGAACTTCTGGTGGGATTCATTCTCAGCAATCAGCAAGGCTGctagaaattattgaatttattcaATCTCAGGGATGTAGCTCTGCTTCAGAATCCTCATCAAGTAGGGTAGTCTCTCCAATTGAAGGGATTATTGAGGAGATGCAATCAAGGATTAGAAGGCTTGAAAGGTGGCTAGCTATTAATACGGTTCTATGGACATTTCTGATGTCTGCCCTTGTTGGTTTTTCACTGTATCAAAGGAGGCGTCAATAA 2859 0.3834 MDDEVVQRVFHEGGRDYFQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKTSLAEKVASVIGCTVISMENYRDGVDEGNDLDSIDFDTLIKNLEDLTEGNDTLIPEFDYQQKRRVGYKTIKNASSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSESSDGHSSSAFQGNEAQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASTTVNNGKVSMSFETIDVLGETFMVMRGTNRKTVGTEALRMGINGPWITKSYLEMILERKGVPRLSTPPLVSTTTVAGSQETVIIAPKPIRVTPNLVTGLEDLSQPWTRSPTKSKMEPVVATWHFISSDSSQPDNSVLDPSSFRDSIRLAPMPDSYDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKQIKDFKYDDFSALDLSLLSKNIDDIRNGQRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRISLDLWIAIVGGVHSHLISRVQRDKSRVGCFISQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDIVAILDSAKFCSSVQKFIDIYIRLPGTPSNGRLRDSDCIRVRICEGRFALLIREPIKEGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDIPGPYIQIKGVNKDAVASAGSMLKLDGSYTTKSYLEIILARLPAIERTSGGIHSQQSARLLEIIEFIQSQGCSSASESSSSRVVSPIEGIIEEMQSRIRRLERWLAINTVLWTFLMSALVGFSLYQRRRQ 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1458 952 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 604 943 - -
Ssu5g1458 952 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 477 604 - -
Ssu5g1458 952 PRINTS Uridine kinase signature 517 534 - -
Ssu5g1458 952 PRINTS Uridine kinase signature 544 555 - -
Ssu5g1458 952 PRINTS Uridine kinase signature 638 648 - -
Ssu5g1458 952 SUPERFAMILY CYTH-like phosphatases 712 859 IPR033469 -
Ssu5g1458 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 687 IPR027417 -
Ssu5g1458 952 Gene3D - 702 864 - -
Ssu5g1458 952 PANTHER URIDINE KINASE 604 943 - -
Ssu5g1458 952 PANTHER URIDINE KINASE 477 604 - -
Ssu5g1458 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 176 IPR027417 -
Ssu5g1458 952 Gene3D - 516 693 IPR027417 -
Ssu5g1458 952 PANTHER URIDINE KINASE 2 421 - -
Ssu5g1458 952 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 421 - -
Ssu5g1458 952 Gene3D - 63 243 IPR027417 -
Ssu5g1458 952 CDD UMPK_like 64 226 - -
Ssu5g1458 952 SMART AAA_5 61 211 IPR003593 -
Ssu5g1458 952 SMART AAA_5 516 660 IPR003593 -
Ssu5g1458 952 CDD UMPK_like 519 687 - -
Ssu5g1458 952 Pfam Phosphoribulokinase / Uridine kinase family 519 684 IPR006083 GO:0005524|GO:0016301
Ssu5g1458 952 Pfam Phosphoribulokinase / Uridine kinase family 107 223 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1458 Ssu-Chr5 46577328 46599562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1458 512 675 PRT Gene Family AT1G55810 25.843 5.33e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1458 - - gmx:100778905 1742.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1458 5 46577328 46599562 Ssu6g1147 6 18659813 18669007 PCT