Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1455 ATGGTTGAGTGTCTCAAGACACTAGGAACAAAACCCCTTGAGGTTGCTACTGCCATAGCTAAGTTCCCTCCCATACTCTCACACAGTGTGGAAGAGAAGCTTTGCCCCCTTTTGGCCTTCTTTCAGACTCTGGGCATCCCCGAAAAGCAAATTGGGAAAATGATACTGCTACACCCTAGGCTTATCAGCTACAGCATTGAAACAAAGCTAGCAGAAATTGTGGACTTCCTTGCTAGCCTTGGTCTCAATAAGGATGGAATGATCGGAAAAGTTGTAGTCAGGGACCCATATATTATGGGTTATAGTGTTGATAAAAGGCTCCGCCCTACTTCGCAGTTTCTGAAGTCCATAGGTCTGACTGAGCAGGATCTTCAAGTGGTGGCTTTGAACTTCCCAGCAATCTTGAGTAGAAATGTGAACAAGGTTTTGGTACCGAATTATgcatatttaagaaaatgtgGATTTCAAGACAGACAGATAGTTGCTTTGGTGGTTGGTTTTCCTCTGATTCTGATCAAGAGCATCCAAAATTCTTTAGAACCGAGGATCAAGTTTTTAGTAGATGTAATGGGGAGACAAGTTGATGAAGTCATTGATTATCCTTGCTTCTTTCGTCATGGCATGAAGAGATTAGAGTTTCGGTACAAACTTCTAAAGGAGAGGAATTTAGATTGTAGCTTGAGTGAAATGCTGGATTGTAATAAGAAGAAGTTCCTCACGAAGTTTGGCTTGTTAGAAGGATATACCTTGAGTAACTAG 759 0.4097 MVECLKTLGTKPLEVATAIAKFPPILSHSVEEKLCPLLAFFQTLGIPEKQIGKMILLHPRLISYSIETKLAEIVDFLASLGLNKDGMIGKVVVRDPYIMGYSVDKRLRPTSQFLKSIGLTEQDLQVVALNFPAILSRNVNKVLVPNYAYLRKCGFQDRQIVALVVGFPLILIKSIQNSLEPRIKFLVDVMGRQVDEVIDYPCFFRHGMKRLEFRYKLLKERNLDCSLSEMLDCNKKKFLTKFGLLEGYTLSN 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1455 252 PANTHER CGI-12 PROTEIN-RELATED 1 245 IPR003690 GO:0003690|GO:0006355
Ssu5g1455 252 SMART mt_12 125 156 IPR003690 GO:0003690|GO:0006355
Ssu5g1455 252 SMART mt_12 161 193 IPR003690 GO:0003690|GO:0006355
Ssu5g1455 252 SMART mt_12 194 224 IPR003690 GO:0003690|GO:0006355
Ssu5g1455 252 SMART mt_12 52 83 IPR003690 GO:0003690|GO:0006355
Ssu5g1455 252 SMART mt_12 89 120 IPR003690 GO:0003690|GO:0006355
Ssu5g1455 252 SMART mt_12 16 47 IPR003690 GO:0003690|GO:0006355
Ssu5g1455 252 Pfam mTERF 69 239 IPR003690 GO:0003690|GO:0006355
Ssu5g1455 252 Pfam mTERF 3 79 IPR003690 GO:0003690|GO:0006355
Ssu5g1455 252 Gene3D Transcription termination factor 3, mitochondrial 1 246 IPR038538 -
Ssu5g1455 252 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL 1 245 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu5g1455 mTERF 5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1455 K15032 - gmx:100816929 431.409