Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1454 ATGGAGCCTAATGCCTACACTACGCATTCCCATTGCATAGAAATGTCCATGGAAGCGCACCAAGTTGTTCCACCACCCCACAAGAGCACCCTACAGAAGCTCAAGGCCAGGCTCAAGGAAACCTTTTTCCCTGATGATCCTCTGCGCCAATTCAAGGGACAACCACTTAAGAGAAAACTAATTCTTGGAGCTCAATATGTGTTCCCTATTCTTCAATGGGGTCCTAAGTACAATCTCAAACTCTTTAAATCTGACCTTGTTGCTGGCCTCACTATTGCTAGCTTGGCCATACCACAGGGAATCAGTTATGCTAAGCTTGCAAGTCTTCCTCCAATTGTGGGACTTTATTCTAGTTTTGTTCCCCCACTTGTTTATGCTGTTCTTGGAAGCTCAAAGGACCTTGCAGTAGGACCTGTTTCTATCGCTTCTCTTGTGTTGGGATCAATGTTAAGGCAGGAAGTGTCTCCCTCAGCAGACCCAGTTCTGTTTCTTCAGCTGGCTTTTACTTCAACATTATTTGCTGGTCTCTTTCAAGCTTCTCTTGGAATCCTAAGGCTAGGCTTTATCATTGATTTTCTATCAAAGGCCATCCTTATTGGGTTCATGGCTGGAGCTGCTATAATTGTCTCACTGCAACAGCTCAAGAGCCTGCTTGGAATCACACATTTCACTAATCAGATGGAGCTGATTCCTGTTATGAGTTCTGTTTTTCACAACATACATGAGTGGTCATGGCAAACAATATTGATGGGGATTTGCTTCTTGGTGCTACTACTATTAGCAAGACACGTTAGCATAAGGAAACCAAAGCTATTCTGGGTCTCAGCTGGAGCTCCTCTTGTGTGTGTCATCATCTCTACTCTGCTGGTATTTGCAATTAAGGCTCAAAATCATGGCATCAGCATAATTGGAAAATTGCAACAAGGATTAAATCCTCCTTCATGGAATATGTTGCGCTTGCATGGAAGTCACCTAGGCCTAGTCATGAAAACTGGGATTATCACTGGCATTTTGTCCCTTACTGAAGGTATTGCAGTAGGAAGGACATTTGCAGCTCTCAGAAACTACAAAGTGGATGGAAATAAGGAAATGATGGCAATTGGGTTTATGAATGTGGTTGGCTCCTTCACTTCCTGCTATGTTACAACAGGTTCTTTCTCTCGGTCAGCTGTTAATAATAACGCAGGTGCAAAAACAGCtgtgtcaaatgtagtgatgtcTGTGACAGTCATGGTAACACTCCTTTTTCTCATGCCATTGTTCCAATACACACCTAATGTCGTATTGGGTGCAATCATAGTCACAGCAGTAATTGGCCTCATTGATGTTCCTGCTGCTTGTAACATTTGGAAGATAGACAAATTCGATTTCCTTGTGATGTTGGCTGCTTTCTTGGGTGTTCTTTTTATCTCTGTCGAGGGAGGCCTTGCTCTTGCTGTAAGTTCATTTATTTCTTCAGTTTTTGCTCATAACGCTCACATTGTGAACATTATTATGGATTTGCCATTATGTACGATATCAACAAGGCTACaactatattttagtttttcaagatAA 1557 0.4136 MEPNAYTTHSHCIEMSMEAHQVVPPPHKSTLQKLKARLKETFFPDDPLRQFKGQPLKRKLILGAQYVFPILQWGPKYNLKLFKSDLVAGLTIASLAIPQGISYAKLASLPPIVGLYSSFVPPLVYAVLGSSKDLAVGPVSIASLVLGSMLRQEVSPSADPVLFLQLAFTSTLFAGLFQASLGILRLGFIIDFLSKAILIGFMAGAAIIVSLQQLKSLLGITHFTNQMELIPVMSSVFHNIHEWSWQTILMGICFLVLLLLARHVSIRKPKLFWVSAGAPLVCVIISTLLVFAIKAQNHGISIIGKLQQGLNPPSWNMLRLHGSHLGLVMKTGIITGILSLTEGIAVGRTFAALRNYKVDGNKEMMAIGFMNVVGSFTSCYVTTGSFSRSAVNNNAGAKTAVSNVVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVIGLIDVPAACNIWKIDKFDFLVMLAAFLGVLFISVEGGLALAVSSFISSVFAHNAHIVNIIMDLPLCTISTRLQLYFSFSR 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1454 518 PANTHER BNAA09G30120D PROTEIN 18 484 IPR030313 -
Ssu5g1454 518 Pfam Sulfate permease family 82 462 IPR011547 GO:0016021
Ssu5g1454 518 ProSitePatterns SLC26A transporters signature. 111 132 IPR018045 GO:0008271|GO:0008272
Ssu5g1454 518 TIGRFAM sulP: sulfate permease 69 488 IPR001902 GO:0015301|GO:0016020|GO:0055085
Ssu5g1454 518 PANTHER SULFATE TRANSPORTER 18 484 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1454 Ssu-Chr5 46515662 46521326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1454 14 490 Inorganic Solute Cotransporters AT3G15990 69.392 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1454 K17471 - gmx:100787284 872.078