Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1449 ATGTCTGATTCATTCAGTGGTACCTTTCACTCTTCCATTCCAAATTCCACCCACAATTCCCATGCAGACCCCAAAATCACCACATTCTGCTCAATAGCCCAACCTTATTGTATTTGCACCCACTGTAACCACATCCTCACCTTCAACCCCCATGTTGGTCATGTAGCAGAGGAAGGGACAAATAACACAGGGTCCCATGTGCAGTCCCAGCAAAGCACAAGGTGGAGTCCAACACCAGTTCAGTTACTAGTCCTTGAGGAATTGTATAGGCAAGGCACTAAAACACCATCAGCTgaacaaattcaacaaatagCTTCACAGTTGCGCCAGTTTGGGAAGATTGAAGGGAAGAACGTGTTCTACTGGTTCCAGAATCACAAGGCCAGAGAGAGACAGAAGCGGCGTCGCAGGGAGATGGAGGAAAATGCCGCTTCTTCTAGTGAagGGTTGAAAGAGACAGGTTGTGGAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCAAACTGCAGTGGACATGCAGAGGAATCAGCTGCAATGGATATAGCAGAAAAGGTATCTAATGGGTGGACTCAATTTGAGGAGAGAGGCACACAAGTTTTGGGGAGAAACACAGCAGAAAGGCAAGCTAAGTGGCAGGATATGGAGATGCCTTGTTTCCCTCCCATTACTATGGCAGCTCTTACAACAGCACACAGAACACATAACACACAACTTTTAACccatcaaaattataatttaccaTCCGATCTCAACAGAGAAAGTTTAAACTATTATGATGAAGGAAACGCAGATCCTCGTACCCTCGACCTATTTCCACATAAGAGGGATGACCAAGATGGCATTTGTCTTGCTGAGAGGAAATCTATGCTCTGTGCCAGCGCTTCTATGGACACTGAAATCACCTCCAACCAGTTTTTTGAGTTTCTTCCTTTAAGAAACTGA 942 0.4374 MSDSFSGTFHSSIPNSTHNSHADPKITTFCSIAQPYCICTHCNHILTFNPHVGHVAEEGTNNTGSHVQSQQSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEENAASSSEGLKETGCGVKETKKWASTSNCSGHAEESAAMDIAEKVSNGWTQFEERGTQVLGRNTAERQAKWQDMEMPCFPPITMAALTTAHRTHNTQLLTHQNYNLPSDLNRESLNYYDEGNADPRTLDLFPHKRDDQDGICLAERKSMLCASASMDTEITSNQFFEFLPLRN 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1449 313 SMART HOX_1 70 137 IPR001356 GO:0003677
Ssu5g1449 313 MobiDBLite consensus disorder prediction 1 20 - -
Ssu5g1449 313 SUPERFAMILY Homeodomain-like 66 135 IPR009057 -
Ssu5g1449 313 CDD homeodomain 73 128 IPR001356 GO:0003677
Ssu5g1449 313 ProSiteProfiles 'Homeobox' domain profile. 68 133 IPR001356 GO:0003677
Ssu5g1449 313 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 17 313 IPR044555 GO:0003700|GO:0099402
Ssu5g1449 313 Gene3D - 56 147 - -
Ssu5g1449 313 MobiDBLite consensus disorder prediction 130 153 - -
Ssu5g1449 313 Pfam Homeodomain 72 132 IPR001356 GO:0003677
Ssu5g1449 313 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 17 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1449 Ssu-Chr5 46423199 46425036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1449 61 313 Wox Gene Family AT3G18010 33.866 1.45e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ssu5g1449 Homeodomain 3.8e-19 CL0123