Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1423 ATGCTTGGTGGCGGTGGCAAAAGCAGCACAAGACTTGGACAATCATCATGTTCATGTCCACCAAGAATGAGTCTTGCAAGCTTGAAAGAGCTCAACCTCCGTGCCagcaaaaaattaactaatctCCCAGATTTATCTCTAGCGCCGAATCTTGAAACTATAGATGTTTCTCATTGCACAAGTCTGCTTCATGTTCCCTTATCCATCCAGTGTGTCAAGAAGCTTCTTTTGTTTAACTTGGAATCCTGCAAGAGTCTTAAGAGTCTTCCACGAAACATCCACTTATCTTCTCTTGAAATGTTCATTCTCAGACGCTGTTCAAGTCTTGACGAATCACTTGAGATTGTTCAAAGTTCAAAGACCGTCTTAATAGAAGATAAATATGCATTCTATTACAATTGCATAAACTTGGATCAAAATTCACGCAACAATATCATTGCAGATGCACCCTTTGAGGCAGCTTTTACTTCTTTGCAAGAAGGAACGCCTCTTGGTcctctcttttctatttgtttGCCAGGAACTGAAATCCCAGACTGGTTCGACTACCAATCAACAAATTCTTCGCTGGACATGGAAATTCCTCAACAGTGGTTCATTGATTCAAAGTTCTTAGGTTTTGCTCTGTGCCTTGTAATTGGTGGTTTCCAGCAAAACAGTTATGAAGGCTATGATCCAGATGTCAATTGTTATCACTTTGTGAAGTCTGCCCTTAACTCTGACCCCAGTGTTCCCTTTCTTGGCCATTGTACAACTGTAATGCAGGTGCCAAGAGGTTTTAATTCagatcatatattcatatgCTACTATCCCGCTTTTAATGCCTCCATACTGCAAGATTTCAAGGATTTAGGCTTGTACTATGATGCCAACAACTTAAGACTCAAAGTCATCTTTAAATTTAAGGGTCCATCTCAACGTTTGGACATTGTAAAGAAGTGTGGGGTCAGACCTCTGTTGATTGCTAATTCTGAAAGGCTTCACATAGAAAGTGAACTACAACCTGACGAGAAGGGAGTATGA 1023 0.3891 MLGGGGKSSTRLGQSSCSCPPRMSLASLKELNLRASKKLTNLPDLSLAPNLETIDVSHCTSLLHVPLSIQCVKKLLLFNLESCKSLKSLPRNIHLSSLEMFILRRCSSLDESLEIVQSSKTVLIEDKYAFYYNCINLDQNSRNNIIADAPFEAAFTSLQEGTPLGPLFSICLPGTEIPDWFDYQSTNSSLDMEIPQQWFIDSKFLGFALCLVIGGFQQNSYEGYDPDVNCYHFVKSALNSDPSVPFLGHCTTVMQVPRGFNSDHIFICYYPAFNASILQDFKDLGLYYDANNLRLKVIFKFKGPSQRLDIVKKCGVRPLLIANSERLHIESELQPDEKGV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1423 340 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 109 IPR044974 GO:0006952
Ssu5g1423 340 Pfam C-JID domain 172 317 IPR045344 -
Ssu5g1423 340 PANTHER RESISTANCE PROTEIN N, PUTATIVE-RELATED 26 109 - -
Ssu5g1423 340 PANTHER RESISTANCE PROTEIN N, PUTATIVE-RELATED 155 279 - -
Ssu5g1423 340 Gene3D Ribonuclease Inhibitor 8 129 IPR032675 -
Ssu5g1423 340 SUPERFAMILY L domain-like 24 122 - -
Ssu5g1423 340 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 155 279 IPR044974 GO:0006952
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1423 13 115 WRKY Transcription Factor Family AT4G12020 41.748 2.12e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1423 - - gmx:100797269 456.062