Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1418 ATGTCTTCTTTCTCTAATCCCCAGTGCATCCACGACGTGTTCCTCAGCTTCAGAGGAGAAGACACGCGCAGGAACTTCGTTTCTCATCTCTACGCTTCCCTCACAAACGCGGGAGTCAACACTTTCCTCGACGATGAGAAGATCGAAAGGGGAACGCAGCTGGTAACCGAAATATGGCGGGCGATAGAAGGATCGAGAATCTTTATCGTCGTTTTCTCCAAAGCGTTCGCGCACTCCAGTTGGTGCCTTCACGAAATGGTGATGATTATGGAATGCCACCGCAACATGGGTCAGGTGGTTCTGCCCGTGTTTTACGACGTCGACCCGTCCCACGTGCGTCGTCACAAAGGTGCTTTCGGAGAAGCGTTGGAAGCGCACGCGACCAAATACCCCAGGGTGTCTAACTTCGTGGGGCTTTGTAAGAGAGCTCTCACCGAAGCTGCCAATTTGCCCGGTTGGGATGTCAGCAAATGCAGGAATGAGAGCAAGGTAGTGAATCAAATTGTTAGTGCTGTTTTGGAAAAACTAGACATTTCAAACTTGCCTATAACAGATTATCCAGTTGGATTGGAATCCCGTCTGCAAGACGTGATTCAATTTTTAGAAACCAGATCAACAAGTGTTTGTGTAATAGGGATATGGGGAATGGGAGGTATAGGTAAAACAACTATTGCCAAAGCCAGCTACAATAAAATTCATCGCAATTTCAGTGATAAAAGTTTCCTTGAAAATATTAGAGAAGAATGGGAGAAAGACAGAGGACAAATTGATTTACAGGAACAACTTCTCTTAGACATCCTTAAAACGGGAAAGATAAAGGTGCAAAGCATTGAGAAAGGGAAAGCCATGATCAAGGAAAGACTTCGCAGCAAAAGGGTACTTCTTGTTCTTGATGATGTGAATAAGTCAGAGCAATTAAATGCACTAAGTGGATTGGTACAGGAAGTGTAA 951 0.4501 MSSFSNPQCIHDVFLSFRGEDTRRNFVSHLYASLTNAGVNTFLDDEKIERGTQLVTEIWRAIEGSRIFIVVFSKAFAHSSWCLHEMVMIMECHRNMGQVVLPVFYDVDPSHVRRHKGAFGEALEAHATKYPRVSNFVGLCKRALTEAANLPGWDVSKCRNESKVVNQIVSAVLEKLDISNLPITDYPVGLESRLQDVIQFLETRSTSVCVIGIWGMGGIGKTTIAKASYNKIHRNFSDKSFLENIREEWEKDRGQIDLQEQLLLDILKTGKIKVQSIEKGKAMIKERLRSKRVLLVLDDVNKSEQLNALSGLVQEV 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1418 316 Gene3D - 177 315 IPR027417 -
Ssu5g1418 316 Pfam NB-ARC domain 192 309 IPR002182 GO:0043531
Ssu5g1418 316 Gene3D - 10 176 IPR035897 -
Ssu5g1418 316 PRINTS Disease resistance protein signature 287 301 - -
Ssu5g1418 316 PRINTS Disease resistance protein signature 210 225 - -
Ssu5g1418 316 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Ssu5g1418 316 Pfam TIR domain 11 177 IPR000157 GO:0007165
Ssu5g1418 316 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 310 IPR044974 GO:0006952
Ssu5g1418 316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 309 IPR027417 -
Ssu5g1418 316 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 153 IPR035897 -
Ssu5g1418 316 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 310 - -
Ssu5g1418 316 SMART till_3 10 150 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1418 Ssu-Chr5 45896575 45898213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1418 11 313 WRKY Transcription Factor Family AT4G12020 25.325 4.99e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1418 - - aprc:113850721 494.197