Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1406 ATGTCTGAGAAAATGGAAGGGAATGCGAATAGAGACCAAATTGTGGATGTTGGATCGGTGGTGGAAGCCGTTACTGCTGAAGACGGTGACGCTCCTCTTTACAACCTCGAAAGTCTCTGCATGCGTTGCGGTGAAAACGGGATTACAAgatttttattgactttaattCCTCACTTCAGAAAGATTTTGTTGTCAGCATTTGAATGTCCTCACTGTGGTGAGAGGAACAATGAAGTACAGTTTGCTGGTGAAATTCAACCGTGTGGTTGTTGTTACTCTCTAGAGATCCCATCAGGCGAACAGAAGATGCTAAATCGACAAGTGGTAAAATCAGAATCTGCTACCATTAAgATACCTGAACTGGATTTGGAGATTCCACCAGAGGCTCAGCGTGGTAGTCTGTCAACGGTGGAAGGGATACTTATGAGAGCAGCTGATGAACTACAGGCTCTTCAAGAAGAACGCAAAAAAGTGGCTCCAGAGACAGCTGAAGCAATTGATCAGTTTTTGGTGAAACTGCAAGCCTGTGCAACAGGAGAATCAGCCTTCACGTTTATTCTTGATGATCCTGCTGGAAACAGCTTCATTGAAAACCCGTTTGCTCCATCATCCGATCCATCACTGACTATCAAGTTTTATGAGAGAACTCCTGAGCAGCAAGCATCATTGGGATACCTTGTTGATTCCACACAGATTGAAGGAACTCACGATGAAGCACCAGAAGGAGGAGAAGCTGTGACTGCTGATCAAGTGAGGAGAAAACCACATGGGTCAATAGGGGCAGCAGCTGGTCATCGAGCCATTGCTCAGAGTAATAGTGCAGAAATTGCTGAAGCCTTATTTAGATATACTGCACCAGAAGAGGTGATGACTTTCCCATCAACTTGTGGTGCCTGTGCTGCTAGGTGTGAGACTCGAATGTTCGTGACTAATATTCCTTACTTCCAAGAAGTAATCGTTATGGCATCCACATGTGATTCCTGTGGTTACCGCAACTCTGAGTTGAAACCTGGTGGACAAATTCCtgataaaggaaaaagaattacTCTTTATGTGAAGAATGTTAATGACCTGAGCCGTGATGTAATAAAGTCTGATACCGCAAGCGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGTGGCACCCTAGGAGGAATTGTTACAACTGTTGAAGgtttaattgcaaaaattagTGAAAGCCTTGAGAGGGTCCATGGCTTTACTTTTGGAGACAGTCTTGATGAACATAGAAGAAGCAAGTGGATAGACTTCAAAACAAGGCTAAGCAAGCTTCTTAGCTTGGAAGAAGCTTGGACTCTAATTCTTGATGATGCATTAGCCAATTCTTTTGTAGCACCTGCAACTGATGATCTGAAAGACGACAATCAACTAGCATTTGAGGAATATGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATGATATGGACACCTCTTCTGCCGACGTTGCTTATGAATCAACAAATACTACTAGAACTGAGTGA 1512 0.422 MSEKMEGNANRDQIVDVGSVVEAVTAEDGDAPLYNLESLCMRCGENGITRFLLTLIPHFRKILLSAFECPHCGERNNEVQFAGEIQPCGCCYSLEIPSGEQKMLNRQVVKSESATIKIPELDLEIPPEAQRGSLSTVEGILMRAADELQALQEERKKVAPETAEAIDQFLVKLQACATGESAFTFILDDPAGNSFIENPFAPSSDPSLTIKFYERTPEQQASLGYLVDSTQIEGTHDEAPEGGEAVTADQVRRKPHGSIGAAAGHRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGACAARCETRMFVTNIPYFQEVIVMASTCDSCGYRNSELKPGGQIPDKGKRITLYVKNVNDLSRDVIKSDTASVKVPELDLELASGTLGGIVTTVEGLIAKISESLERVHGFTFGDSLDEHRRSKWIDFKTRLSKLLSLEEAWTLILDDALANSFVAPATDDLKDDNQLAFEEYERSWEQNEELGLNDMDTSSADVAYESTNTTRTE 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1406 503 PANTHER ZINC FINGER PROTEIN ZPR1-RELATED 5 496 - -
Ssu5g1406 503 Pfam ZPR1 zinc-finger domain 38 197 IPR004457 GO:0008270
Ssu5g1406 503 Pfam ZPR1 zinc-finger domain 294 452 IPR004457 GO:0008270
Ssu5g1406 503 MobiDBLite consensus disorder prediction 479 503 - -
Ssu5g1406 503 SMART zpr1 294 454 IPR004457 GO:0008270
Ssu5g1406 503 SMART zpr1 38 198 IPR004457 GO:0008270
Ssu5g1406 503 Coils Coil 134 154 - -
Ssu5g1406 503 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 40 222 IPR004457 GO:0008270
Ssu5g1406 503 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 295 486 IPR004457 GO:0008270
Ssu5g1406 503 PANTHER ZINC FINGER PROTEIN ZPR1 5 496 IPR040141 -
Ssu5g1406 503 Gene3D ZPR1, A/B domain 340 482 IPR042451 -
Ssu5g1406 503 Gene3D ZPR1, A/B domain 84 225 IPR042451 -
Ssu5g1406 503 Gene3D ZPR1, zinc finger domain 284 339 IPR042452 -
Ssu5g1406 503 Gene3D ZPR1, zinc finger domain 30 83 IPR042452 -
Ssu5g1406 503 MobiDBLite consensus disorder prediction 480 503 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1406 12 501 C2H2 Transcription Factor Family AT5G22480 75.356 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1406 K06874 - gmx:100798741 915.605