Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1401 ATGCACGTGCTACCTGATTCCTTTGACATGCTATGGTCTGATTGCTTGAAGGAGAAACCGTGGCACGAGTTTCCGTTTTCGGGGCTTGTTGCTATGTTCTCTGCTATAATCACAATGATGGTGGACTCTTTGGCCACTAGTATTTATACCAAAAAGTGTAGGACTGGGGTTATTCCTGAGAGCAGCCATGCAGGTGGGGACCAAGAGATGGGTGCTGTCAACTTTGGGCATTTCCATGGCCACCACCATGCTGAGACCAAGACAGAGAGCAAGGAGTCACAACTTGTGCGTTATCGCGTAGTCGCCATGGTATTAGAACTTGGAATTGTTGTTCATTCAGTGGTGATAGGACTTGGCATGGGAGCCTCAAATAACACGTGCACAATAAGAGGTCTTATAGCCGCCCTTTGCTTCCATCAAATGTTTGAAGGCATGGGTCTTGGAGGGTGCATTCTACAGGCCGAGTACAAGTTTCTAAAGAAGGCCATCATGGTGTTCTTTTTCTCCGTTACAACCCCATTTGGAATTGCCTTAGGAATTGCAATGTCCACGACCTATACAGAGAACAGCCCAAGTGCACTGATCACTGTGGGATTGCTTAACGCATCATCTGCTGGTCTTTTAATCTATATGGCTTTAGTTGACCTGCTCTCTACTGATTTCATGAGCCCAAGGTTGCAGGGTAGTATTAAGCTTCAATTAAAATCTTACGTAGCGGTATTTTTGGGTGCGGGTGGCATGTCTCTCATGGCAAAATGGGCTTAA 765 0.4614 MHVLPDSFDMLWSDCLKEKPWHEFPFSGLVAMFSAIITMMVDSLATSIYTKKCRTGVIPESSHAGGDQEMGAVNFGHFHGHHHAETKTESKESQLVRYRVVAMVLELGIVVHSVVIGLGMGASNNTCTIRGLIAALCFHQMFEGMGLGGCILQAEYKFLKKAIMVFFFSVTTPFGIALGIAMSTTYTENSPSALITVGLLNASSAGLLIYMALVDLLSTDFMSPRLQGSIKLQLKSYVAVFLGAGGMSLMAKWA 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1401 254 PANTHER ZINC TRANSPORTER 10-RELATED 1 254 - -
Ssu5g1401 254 Pfam ZIP Zinc transporter 1 251 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Ssu5g1401 254 TIGRFAM zip: ZIP zinc/iron transport family 1 254 IPR004698 GO:0005385|GO:0016021|GO:0071577
Ssu5g1401 254 PANTHER ZINC/IRON TRANSPORTER 1 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1401 Ssu-Chr5 45136611 45138464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1401 1 254 Inorganic Solute Cotransporters AT1G31260 66.031 5.12e-121 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1401 K14709 - gmx:100795511 456.062