Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1398 ATGGAAAGAGGCGGTTACAGAGGCAGAGGCCGCGGCCGTAGTGGTGGCCGTCACGGTTACGGTGGCCGTGACGGTAACGGTGGTCGTCACGGCTACGGTGGCCGTGACGGTAGTGGTGGCCATTACGGTTACGGTGGTGGCCGGGATGGTAATGGTGGCCGTAACGGTGAAAGAGGAGGAGGGTTTTATCAACATCCCCAATCTGGTAGTGGCAGTGGTAGAGGAATCCCTTCCCAACCACAATCACAACCACAATCTTTGTGGCAAGTAAGGCCAAGCCCTTCTTCCTCTGTTGGATCTTCAAACCCTAGTCATTCTCTTCCTCAAACTCAAAGACAAACTCATCCAGATATTGGATCTTTGAAAATATCGGAGCAGAAAGCGGGGAATACTATCACCCCTGTGCGCAGGCCCGACAATGGGGGAACAGTGGCCATTCGAACATGCAATCTTCGGGCGAATCATTTCCCCGTTTCGTTCAACCCACGCAGCATAATCATGCACTACCACGTGGATGTGAAGGCCAAGAATCCGCGGAAGAGTAATCGGCCTCAGAAGATTTCCAAGTACGAATTGTCGTTGATTCGGGAAAAGCTGTTCTCCGACCACTCGCTGCCCGTGCAGCAGACGGCGTACGACGGCGAGAAGAGCATGTTCAGCGCTGTGCCGTTGCCGGAGGAAACCTTTGCCGTGGACGTGTCGAAAGGAGAGGACGAAAGGACGGATTCGTATTTGGTCACTCTGACGCTGGTGAACAAGCTTGAGCTACGCAAATTAAAGGATTACCTCAGCGGAAGCGTGCTTTCGATTCCCAGGGATATTTTGCAGGGTTTGGATTTAGTGGTGAGGGAGAATCCCGCGAAGGAGTGTGTTTCCTTGGGGCGGTGCTTCTTCCCCATGAACCCTCCGTTGAAGGAGAGGGATCTTCATCATGGGATAGTCGCAATAGGAGGGTTTCAGCAGAGTCTTAAACCCACTTCTCAGGGCTTGTCTTTGTGCCTTGACTATTCAGTTTTGTCGTTTAGGAAGAAACTGTCTGTGTTGGATTTTCTGCATGAGCATGTTAGGGACTTCAATTTGAGGGAGTTTGGGCGATTCAGGAGACAGGTTGAGCAGGCGCTTGTTGGGTTGAAGGTTAATGTTACCCACCGGAGGACGAAGCAGAAATACACTATTGCAAAGTTGACACCCAAGAACACGAGGCACATCACGTTTCCTATTTTGGACCCTGATGGCCGGAATCCCCCAAGGGAGGCTAGTCTTCTTGCATACTTTCAGGAGAAATACAGTGTGGACATTCAATACAAGGACATTCCTGCCTTGGATTTTGGAGGCAACAAGACCAATTATGTGCCTATGGAGTTGTGTGTCTTGGTGGAGGGTCAAAGATATCCCAAAGAGAATTTGGACAAATATGCTGCCAAGGACTTGAAGAACATGTCAGTGGCTCCTGTGAACGAGAGGCAACGTACAATACAGGCAATGGTGAGGTCAAGGGAAGGGCCGTGCGGAGGTGggattattcaaaattttggaaTGAGTGTCAACACTTCCATGACAAATGTGACGGGACGTGTAATTCAGCCCCCACAATTGAAGTTGGGTAATCCCAATGGCAAGATTAGTAGTATGACGCTGGAAGTGGAGAAATGTCAGTGGAATCTACTCGGAAGATCAATGGTGGAAGGCAAGCCAGTTGAGTGCTGGGGCATTCTTGATTTTACCAGCCAGGAGTCTAATAATTGGCACAGACTAAAAGGCAAACAATTCATTGACAAGCTTATTGATAAGTACCAAAGATTGGGCATTGGCATGAAGGAGCCAGTTTGGTATGAACAATCTACTATGTGGAGTCTTGGGGATTACAATTCGCTGTGTAAATTACTTGAAAATATTGATGATAAGGTTCAAAAAAGATGTAGACGACGGCTACAATTTCTTCTTTGTGTGATGGCCGACAAACATCAAGGTTACAAGTGCCTTAAATTGATTGCTGAGACCAAGGTTGGCATAGTGACACAGTGCTGCTTGTCTGGTAATGCTAATGAAGGGAAAGACCAATATCTTACAAATCTTGCCCTCAAGATCAATGCCAAAATTGGAGGAAGTAATGTAGAGCTCATCAATAGGTTACCACACTTTGAGGGTGAAGGTCATGTTATGTTCATAGGGGCTGATGTCAATCATCCAGCTTCCCGTGATATCAACAGTCCATCAATTGCTGCTGTGGTTGCCACTGTTAACTGGCCTGCGGCAAATCGCTATGCAGCACGTGTTAGTGCTCAAGGTCATCGGGTTGAGAAAATCTTGAATTTTGGGGGAATTTGCCATGAACTTGTTTTGTATTATGCTAGTCTGAACAAAGTCAGGCCCGAAAAAATTGTTATCTTTCGTGATGGAGTGAGTGAAAGTCAATTTCACATGGTTCTTACGGAGGAGCTACAAGATTTAAAGTCTGTGTTTCGTGCATCAAACTACTTCCCAACCATCACTCTTATTGTTGCACAAAAGCGACATCAGACTCGATTTTTCCCTGTGAGTGCGAGAGATGGGATTCCTAATGGCAATGTGTTCCCTGGAACAGTCGTGGACACAAAAGTAGTACACCCTTTTGAGTTTGACTTCTACCTTTGTAGTCACTATGGAAGCCTAGGTACAAGTAAGCCCACTCATTATCATGTTTTGTGGGATGAGCACAAGTTTACCTCTAATGATTTGCAGAAACTCATATATGACATGTGCTTTACCTTTGCAAGGTGCACTAAACCTGTATCTTTAGTCCCTCCAGTATACTATGCTGATCTTACTGCATATAGAGGAAGGTTATACTATGAAGCAATGGATCGAATGCAATCTCCTGGTTCAGCTGCATCTTCTTCATCGTCGCGTATTACTTCTTCATCAGTTTCTTCAGCAGGCTCAAGTTTAAATGACCTGGGGTGTTACAAGTTACATGCTGATGTGGAAAACATAATGTTCTTCATCTGA 2988 0.4622 MERGGYRGRGRGRSGGRHGYGGRDGNGGRHGYGGRDGSGGHYGYGGGRDGNGGRNGERGGGFYQHPQSGSGSGRGIPSQPQSQPQSLWQVRPSPSSSVGSSNPSHSLPQTQRQTHPDIGSLKISEQKAGNTITPVRRPDNGGTVAIRTCNLRANHFPVSFNPRSIIMHYHVDVKAKNPRKSNRPQKISKYELSLIREKLFSDHSLPVQQTAYDGEKSMFSAVPLPEETFAVDVSKGEDERTDSYLVTLTLVNKLELRKLKDYLSGSVLSIPRDILQGLDLVVRENPAKECVSLGRCFFPMNPPLKERDLHHGIVAIGGFQQSLKPTSQGLSLCLDYSVLSFRKKLSVLDFLHEHVRDFNLREFGRFRRQVEQALVGLKVNVTHRRTKQKYTIAKLTPKNTRHITFPILDPDGRNPPREASLLAYFQEKYSVDIQYKDIPALDFGGNKTNYVPMELCVLVEGQRYPKENLDKYAAKDLKNMSVAPVNERQRTIQAMVRSREGPCGGGIIQNFGMSVNTSMTNVTGRVIQPPQLKLGNPNGKISSMTLEVEKCQWNLLGRSMVEGKPVECWGILDFTSQESNNWHRLKGKQFIDKLIDKYQRLGIGMKEPVWYEQSTMWSLGDYNSLCKLLENIDDKVQKRCRRRLQFLLCVMADKHQGYKCLKLIAETKVGIVTQCCLSGNANEGKDQYLTNLALKINAKIGGSNVELINRLPHFEGEGHVMFIGADVNHPASRDINSPSIAAVVATVNWPAANRYAARVSAQGHRVEKILNFGGICHELVLYYASLNKVRPEKIVIFRDGVSESQFHMVLTEELQDLKSVFRASNYFPTITLIVAQKRHQTRFFPVSARDGIPNGNVFPGTVVDTKVVHPFEFDFYLCSHYGSLGTSKPTHYHVLWDEHKFTSNDLQKLIYDMCFTFARCTKPVSLVPPVYYADLTAYRGRLYYEAMDRMQSPGSAASSSSSRITSSSVSSAGSSLNDLGCYKLHADVENIMFFI 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1398 995 Gene3D - 716 995 IPR036397 GO:0003676
Ssu5g1398 995 Pfam Argonaute linker 1 domain 293 343 IPR014811 -
Ssu5g1398 995 ProSiteProfiles PAZ domain profile. 345 460 IPR003100 GO:0005515
Ssu5g1398 995 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 69 994 - -
Ssu5g1398 995 SMART Piwi_a_2 646 945 IPR003165 GO:0003676
Ssu5g1398 995 ProSiteProfiles Piwi domain profile. 646 945 IPR003165 GO:0003676
Ssu5g1398 995 Gene3D paz domain 340 464 - -
Ssu5g1398 995 SMART PAZ_2_a_3 345 483 IPR003100 GO:0005515
Ssu5g1398 995 MobiDBLite consensus disorder prediction 1 141 - -
Ssu5g1398 995 Pfam Piwi domain 647 944 IPR003165 GO:0003676
Ssu5g1398 995 MobiDBLite consensus disorder prediction 65 137 - -
Ssu5g1398 995 CDD PAZ_argonaute_like 346 459 - -
Ssu5g1398 995 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 69 994 - -
Ssu5g1398 995 SUPERFAMILY PAZ domain 341 497 IPR036085 GO:0005515
Ssu5g1398 995 Gene3D - 526 708 - -
Ssu5g1398 995 Pfam PAZ domain 360 470 IPR003100 GO:0005515
Ssu5g1398 995 SMART DUF1785_2 291 344 IPR014811 -
Ssu5g1398 995 CDD Piwi_ago-like 507 944 IPR045246 -
Ssu5g1398 995 Pfam N-terminal domain of argonaute 147 281 IPR032474 -
Ssu5g1398 995 SUPERFAMILY Ribonuclease H-like 630 946 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1398 Ssu-Chr5 45047811 45051779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1398 147 963 Eukaryotic Initiation Factors Gene Family AT1G48410 35.581 1.04e-148 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1398 K11593 - gmx:100805250 1530.77