Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1394 ATGAAAGATGGTGGTAGGAAGCAGGGTGCACCCTCACCCTGTGCTGCATGCAAGCTCCTCCGGAGAAGGTGTGCTCAGGATTGTGTTTTTGCTCCTTATTTTCCTGCGGATGAACCCCAGAAGTTTGCAAATGTGCACAAAGTGTTTGGGGCCAGCAATGTCAACAAGATGCTTCAGGACTTACCAGAGCATCAGCGAGGAGATGCAGTGAGCAGCATGGTGTATGAAGCGAATGCAAGAGTGAGAGACCCTGTCTATGGCTGCGTAGGGGCCATTTCATCTCTTCAGCAGCAGATTGATGTGTTACAGACCCAATTGGCCGTAGCCCAAGCTGAGGCTGTGCACCTCAGGGTTCGCCAAACTGCACCCTTCTGGAATCCAGGGCCCACTAGCCCAACCAATAGTGGCTCCCCATCATCCAAGATCATTGAGTCGCAAGCCAAGCCTATTTTTGACATGGACATGGTGGTGGACCAGAACAGCTACGGTGATTCAATGTGGTGA 504 0.5179 MKDGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTAPFWNPGPTSPTNSGSPSSKIIESQAKPIFDMDMVVDQNSYGDSMW 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1394 167 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Ssu5g1394 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 160 - -
Ssu5g1394 167 Coils Coil 92 112 - -
Ssu5g1394 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 160 - -
Ssu5g1394 167 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1394 Ssu-Chr5 44917756 44921574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1394 1 167 AS2 family AT1G31320 72.674 4.33e-76 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu5g1394 LOB 6.1e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1394 - - gmx:100802822 301.212